WormBase Tree Display for Gene: WBGene00031909

WBGene00031909 SMap: S_parent: Sequence: cb25.fpc2328
  Identity: Version: 2
    Name: CGC_name: Cbr-spl-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG10544
      Molecular_name: CBG10544
        CBG10544.1
        CBP08574
      Other_name: CBG_10544 Accession_evidence: NDB HE601209
      Public_name: Cbr-spl-1
    DB_info: Database: NDB locus_tag CBG_10544
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:01 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-spl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spl
    Allele: WBVar00115913
    RNASeq_FPKM: WBls:0000002 26.7122 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        52.4861 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        61.9944 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        68.7516 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        31.7474 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        46.8709 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        47.3014 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 24.043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        28.7861 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        33.5291 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        29.0724 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        29.6451 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 33.5665 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        33.9188 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        34.2712 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        23.2213 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        32.4168 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        33.6734 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        37.3517 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 20.0617 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        28.1654 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        57.5369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        6.89758 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        35.6707 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        38.7993 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        58.1868 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 63.3997 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 36.9564 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        58.197 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        62.7175 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        63.1094 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        68.0218 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        87.6948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 37.7517 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        41.4556 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        43.2172 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        44.8267 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        44.9788 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        55.1207 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        40.7657 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        45.2483 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        51.4172 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        58.0792 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        68.0828 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        69.8272 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        72.9735 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        79.5126 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        60.9667 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        71.4004 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        75.4041 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 48.6487 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        52.1189 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        43.2172 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        47.1638 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00135347
      00135348
      00135349
    Ortholog (32)
    Paralog: WBGene00024028 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028506 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030647 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034615 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035897 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037453 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038467 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042089 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable carbon-carbon lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in carboxylic acid metabolic process. Is an ortholog of C. elegans spl-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG10544
    Corresponding_CDS_history: CBG10544:bp194
    Corresponding_transcript: CBG10544.1
    Other_sequence (36)
  Experimental_info: Expr_pattern: Expr1060842
    Microarray_results: GPL8303_CB6_WBGene00031909_A
      GPL8303_CB6_WBGene00031909_B
      GPL14143_CBG10544_1222-1281_0.939_1_C
      GPL14143_CBG10544_1348-1407_0.927_5_B
      GPL14143_CBG10544_1563-1622_0.769_100_A
  Method: Gene