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WormBase Tree Display for Gene: WBGene00032829

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Name Class

WBGene00032829SMapS_parentSequencecb25.fpc2587
IdentityVersion2
NameCGC_nameCbr-tat-1From_analysisInferred_from_orthology
Sequence_nameCBG11754
Molecular_nameCBG11754a
CBG11754a.1
CBP49577
CBG11754b
CBP49424
CBG11754c
CBP49295
CBG11754b.1
CBG11754c.1
Other_nameCBG_11754Accession_evidenceNDBHE601289
Public_nameCbr-tat-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tat-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtat
Allele (41)
RNASeq_FPKMWBls:000000212.0928From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.9622From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.7873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.52879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.754From_analysisRNASeq.briggsae.WBls:0000002.control_median
11.206From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.54577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000313.1814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
15.8533From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
18.5252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
13.0845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
14.9304From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000417.3211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
17.6903From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
18.0594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
17.0982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
17.4847From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
17.7181From_analysisRNASeq.briggsae.WBls:0000004.control_mean
18.6273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.2896From_analysisRNASeq.briggsae.WBls:0000027.control_mean
31.6042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.58943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.67516From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.9126From_analysisRNASeq.briggsae.WBls:0000027.control_median
18.0047From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.1501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003521.6048From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.5738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
17.5632From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.5871From_analysisRNASeq.briggsae.WBls:0000038.control_mean
21.5525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
32.2855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.9365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.9376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
13.5273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
14.2129From_analysisRNASeq.briggsae.WBls:0000041.control_median
14.8985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
15.8702From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.1174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
11.6085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
15.8993From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.3063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.4096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
10.4792From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.6379From_analysisRNASeq.briggsae.WBls:0000063.control_mean
12.031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
15.583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
9.68654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.4444From_analysisRNASeq.briggsae.WBls:0000063.control_median
11.3514From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.91921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.5738From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.7853From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.2361From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.0421From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00136185
00136186
00136187
00136188
00136189
00136190
00136191
00136192
Ortholog (39)
ParalogWBGene00025623Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032754Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036728Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037766Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and ion binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-1. In C. elegans, tat-1 is involved in several processes, including lysosome organization; phospholipid translocation; and regulation of phagocytosis, engulfment.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11754a
CBG11754b
CBG11754c
Corresponding_CDS_historyCBG11754:bp194
CBG11754:bp266
Corresponding_transcriptCBG11754a.1
CBG11754b.1
CBG11754c.1
Other_sequence (87)
Experimental_infoExpr_patternExpr1056136
Microarray_resultsGPL8303_CB6_WBGene00032829_A
GPL8303_CB6_WBGene00032829_B
GPL14143_CBG11754_1367-1426_0.650_309_C
GPL14143_CBG11754_1882-1941_0.768_87_B
GPL14143_CBG11754_2910-2969_0.898_1_A
MethodGene