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WormBase Tree Display for Gene: WBGene00032909

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Name Class

WBGene00032909SMapS_parentSequencecb25.fpc2695
IdentityVersion2
NameCGC_nameCbr-pbrm-1From_analysisInferred_from_orthology
Sequence_nameCBG11867
Molecular_nameCBG11867
CBG11867.1
CBP42636
Other_nameCBG_11867Accession_evidenceNDBHE601268
Public_nameCbr-pbrm-1
DB_infoDatabaseNDBlocus_tagCBG_11867
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pbrm-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpbrm
AlleleWBVar00117967
WBVar00117968
WBVar00117969
WBVar00117963
WBVar00117970
WBVar00117964
WBVar00117971
WBVar00117965
WBVar00117966
RNASeq_FPKMWBls:000000211.1708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
34.2628From_analysisRNASeq.briggsae.WBls:0000002.control_mean
34.3758From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
57.2418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
37.7785From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.3507From_analysisRNASeq.briggsae.WBls:0000002.control_median
48.3255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003190.454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
214.807From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
239.161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
218.744From_analysisRNASeq.briggsae.WBls:0000003.control_mean
226.616From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004139.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
141.146From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
142.602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
143.701From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
146.483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
148.401From_analysisRNASeq.briggsae.WBls:0000004.control_mean
169.528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002710.7621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
21.5544From_analysisRNASeq.briggsae.WBls:0000027.control_mean
22.5477From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
31.3533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
24.6858From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.9505From_analysisRNASeq.briggsae.WBls:0000027.control_median
34.0802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003539.7284From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003817.9889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.0596From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
22.244From_analysisRNASeq.briggsae.WBls:0000038.control_median
24.7871From_analysisRNASeq.briggsae.WBls:0000038.control_mean
25.4285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
36.6715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004125.8208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
58.8261From_analysisRNASeq.briggsae.WBls:0000041.control_mean
67.7383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
68.7947From_analysisRNASeq.briggsae.WBls:0000041.control_median
69.8512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
71.8942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.0392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
29.8403From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
47.6973From_analysisRNASeq.briggsae.WBls:0000041.control_mean
48.7893From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006330.988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
31.2669From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
31.9548From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.4392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
35.2967From_analysisRNASeq.briggsae.WBls:0000063.control_mean
48.8344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
30.9597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
31.6108From_analysisRNASeq.briggsae.WBls:0000063.control_median
34.5738From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010131.9548From_analysisRNASeq.briggsae.total_over_all_stages.control_median
53.7413From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
33.7597From_analysisRNASeq.briggsae.total_over_all_stages.control_median
63.3966From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00136241
00136242
00136243
Ortholog (38)
Structured_descriptionAutomated_descriptionPredicted to enable chromatin binding activity. Predicted to be involved in chromatin remodeling. Predicted to be part of RSC-type complex. Is an ortholog of C. elegans pbrm-1. In C. elegans, pbrm-1 is involved in gonad development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11867
Corresponding_CDS_historyCBG11867:bp194
CBG11867:bp255
Corresponding_transcriptCBG11867.1
Other_sequence (35)
Experimental_infoExpr_patternExpr1061613
Microarray_resultsGPL8303_CB6_WBGene00032909_A
GPL8303_CB6_WBGene00032909_B
GPL14143_CBG11867_5784-5843_0.723_313_C
GPL14143_CBG11867_5864-5923_0.945_1_B
GPL14143_CBG11867_6004-6063_0.882_39_A
MethodGene