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WormBase Tree Display for Gene: WBGene00033539

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Name Class

WBGene00033539SMapS_parentSequencecb25.fpc2888a2
IdentityVersion2
NameCGC_nameCbr-ncbp-1From_analysisInferred_from_orthology
Sequence_nameCBG12621
Molecular_nameCBG12621
CBG12621.1
CBP17552
Other_nameCBG_12621Accession_evidenceNDBHE600940
Public_nameCbr-ncbp-1
DB_infoDatabaseNDBlocus_tagCBG_12621
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ncbp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classncbp
AlleleWBVar00118730
WBVar00118731
WBVar00118732
RNASeq_FPKMWBls:000000222.0517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
27.9221From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
28.8727From_analysisRNASeq.briggsae.WBls:0000002.control_mean
36.6444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
28.5889From_analysisRNASeq.briggsae.WBls:0000002.control_median
28.9685From_analysisRNASeq.briggsae.WBls:0000002.control_mean
29.2557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003149.14From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
154.279From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
159.418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
152.971From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
153.843From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004103.3From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
109.481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
97.1185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
103.324From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
105.456From_analysisRNASeq.briggsae.WBls:0000004.control_mean
119.212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
98.1423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.659477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
14.5172From_analysisRNASeq.briggsae.WBls:0000027.control_mean
38.9695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.92273From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.7172From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.7658From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.5116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003521.3514From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003822.3622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
22.7104From_analysisRNASeq.briggsae.WBls:0000038.control_median
23.0586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
25.8778From_analysisRNASeq.briggsae.WBls:0000038.control_mean
48.339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.75147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004149.7774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
58.2109From_analysisRNASeq.briggsae.WBls:0000041.control_mean
59.5387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
60.2703From_analysisRNASeq.briggsae.WBls:0000041.control_median
61.0019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
62.5256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
57.2368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
57.7558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
57.9727From_analysisRNASeq.briggsae.WBls:0000041.control_mean
58.6473From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006334.5264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
34.9968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
35.2303From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
36.5812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
43.4873From_analysisRNASeq.briggsae.WBls:0000063.control_mean
76.1018From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
31.8876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
35.1135From_analysisRNASeq.briggsae.WBls:0000063.control_median
41.554From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010135.2663From_analysisRNASeq.briggsae.total_over_all_stages.control_median
46.1977From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
36.6128From_analysisRNASeq.briggsae.total_over_all_stages.control_median
52.8692From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00136941
00136942
00136943
00136944
00136945
Ortholog (31)
Structured_descriptionAutomated_descriptionPredicted to enable RNA cap binding activity. Predicted to be involved in RNA metabolic process and mRNA export from nucleus. Predicted to be part of nuclear cap binding activity complex. Is an ortholog of C. elegans ncbp-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12621
Corresponding_CDS_historyCBG12621:bp194
CBG12621:bp255
Corresponding_transcriptCBG12621.1
Other_sequence (17)
Experimental_infoExpr_patternExpr1055238
Microarray_resultsGPL8303_CB6_WBGene00033539_A
GPL8303_CB6_WBGene00033539_B
GPL14143_CBG12621_132-191_0.773_151_B
GPL14143_CBG12621_195-254_0.778_147_A
GPL14143_CBG12621_1480-1539_0.868_49_C
MethodGene