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WormBase Tree Display for Gene: WBGene00033641

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Name Class

WBGene00033641SMapS_parentSequencecb25.fpc2888a2
IdentityVersion2
NameCGC_nameCbr-smg-1From_analysisInferred_from_orthology
Sequence_nameCBG12735
Molecular_name (12)
Other_nameCBG_12735Accession_evidenceNDBHE600940
Public_nameCbr-smg-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-smg-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmg
AlleleWBVar00014717
RNASeq_FPKMWBls:000000212.8624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.24579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.26499From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.79106From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.47821From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.69143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
9.51615From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000311.4819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
12.3295From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
13.1771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
12.0685From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
12.2425From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000424.3569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
24.414From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
24.4711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
22.0102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
24.1356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
24.2071From_analysisRNASeq.briggsae.WBls:0000004.control_mean
26.0619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.20451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
19.6094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.2403From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.01807From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.88202From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.14449From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.52374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.18136From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003817.0063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.1891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.71366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.73974From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.76582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.16872From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004117.0095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
17.0529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
17.3219From_analysisRNASeq.briggsae.WBls:0000041.control_median
17.3437From_analysisRNASeq.briggsae.WBls:0000041.control_mean
17.5909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.7216From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
13.172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
16.7595From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.0103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006312.1727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
12.3106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
13.2039From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
14.4715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
14.5259From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
12.7572From_analysisRNASeq.briggsae.WBls:0000063.control_median
13.326From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.32628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010112.5622From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.781From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.8217From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.2711From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137057
00137058
00137059
Ortholog (32)
ParalogWBGene00025810Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033728Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038570Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040661Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00086791Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein serine/threonine kinase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and phosphorylation. Is an ortholog of C. elegans smg-1. In C. elegans, smg-1 is involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12735a
CBG12735b
CBG12735c
CBG12735d
Corresponding_CDS_historyCBG12735:bp194
CBG12735:bp207
CBG12735:bp266
Corresponding_transcriptCBG12735a.1
CBG12735b.1
CBG12735c.1
CBG12735d.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1051233
Microarray_resultsGPL8303_CB6_WBGene00033641_A
GPL8303_CB6_WBGene00033641_B
GPL14143_CBG12735_6087-6146_0.877_47_A
GPL14143_CBG12735_6629-6688_0.911_14_C
GPL14143_CBG12735_7101-7160_0.964_1_B
Expression_clusterWBPaper00059178:Cbr-htz-1(gu167)_upregulated
MethodGene