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WormBase Tree Display for Gene: WBGene00033797

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Name Class

WBGene00033797SMapS_parentSequencecb25.fpc2888b2
IdentityVersion2
NameCGC_nameCbr-ttx-1From_analysisInferred_from_orthology
Sequence_nameCBG12936
Molecular_nameCBG12936
CBG12936.1
CBP22756
Other_nameCBG_12936Accession_evidenceNDBHE600927
Public_nameCbr-ttx-1
DB_infoDatabaseNDBlocus_tagCBG_12936
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ttx-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttx
RNASeq_FPKMWBls:00000020.364782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.9955From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.8408From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.78091From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.04734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.44407From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.50846From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000034.97999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
4.98311From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.98623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.93252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
4.63291From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000422.7479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
28.2278From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
33.7076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
30.3418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
31.0239From_analysisRNASeq.briggsae.WBls:0000004.control_mean
33.5513From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
34.7707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.73239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.6403From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.2139From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
10.2055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.45465From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.7118From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003512.0275From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.13571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
12.737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.37806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.58428From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.26031From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.79049From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000410.485909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.631461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.689716From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.74797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.06176From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.3817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.13734From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.28886From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.52672From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.95938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.899634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.986866From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.07253From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.00815From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.10821From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.13674From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.28662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012.6403From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.40201From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.28641From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.03369From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137210
Ortholog (27)
Paralog (20)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans ttx-1. In C. elegans, ttx-1 is involved in several processes, including regulation of plasma membrane bounded cell projection assembly; thermosensory behavior; and transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12936
Corresponding_CDS_historyCBG12936:bp194
Corresponding_transcriptCBG12936.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1069277
Microarray_resultsGPL8303_CB6_WBGene00033797_A
GPL14143_CBG12936_549-608_0.873_38_B
GPL14143_CBG12936_675-734_0.943_3_C
GPL14143_CBG12936_1036-1095_0.934_11_A
MethodGene