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WormBase Tree Display for Gene: WBGene00033850

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Name Class

WBGene00033850SMapS_parentSequencecb25.fpc2888c
IdentityVersion2
NameCGC_nameCbr-pgam-5From_analysisInferred_from_orthology
Sequence_nameCBG13006
Molecular_nameCBG13006a
CBG13006a.1
CBP36220
CBG13006b
CBP45374
CBG13006b.1
Other_nameCBG_13006Accession_evidenceNDBHE600938
Public_nameCbr-pgam-5
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
221 Jul 2009 15:22:41WBPerson9133Name_changeCGC_nameCbr-pgam-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpgam
RNASeq_FPKMWBls:000000251.2217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
68.7333From_analysisRNASeq.briggsae.WBls:0000002.control_mean
71.3671From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
83.611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
66.94From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
68.285From_analysisRNASeq.briggsae.WBls:0000002.control_mean
69.1535From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003101.033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
101.753From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
102.472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
111.807From_analysisRNASeq.briggsae.WBls:0000003.control_mean
131.916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000450.4545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
52.8194From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
55.1842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
47.024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
52.6282From_analysisRNASeq.briggsae.WBls:0000004.control_mean
52.7913From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
57.6872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.4094From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.9962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
33.3339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.898From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.7601From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.2126From_analysisRNASeq.briggsae.WBls:0000027.control_mean
24.6222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003532.7393From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003821.8359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
29.1842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
34.2796From_analysisRNASeq.briggsae.WBls:0000038.control_median
38.0488From_analysisRNASeq.briggsae.WBls:0000038.control_mean
39.375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
61.8001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041140.24From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
141.091From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
141.672From_analysisRNASeq.briggsae.WBls:0000041.control_median
142.004From_analysisRNASeq.briggsae.WBls:0000041.control_mean
142.253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
144.432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
143.342From_analysisRNASeq.briggsae.WBls:0000041.control_median
155.502From_analysisRNASeq.briggsae.WBls:0000041.control_mean
164.48From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
200.514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006345.3075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
54.412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
55.8634From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
56.7326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
59.5746From_analysisRNASeq.briggsae.WBls:0000063.control_mean
85.5575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
56.298From_analysisRNASeq.briggsae.WBls:0000063.control_median
62.0412From_analysisRNASeq.briggsae.WBls:0000063.control_mean
74.3741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010151.2217From_analysisRNASeq.briggsae.total_over_all_stages.control_median
60.9891From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
54.7981From_analysisRNASeq.briggsae.total_over_all_stages.control_median
68.1325From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (32)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Histidine phosphatase superfamily; Histidine phosphatase superfamily (branch 1); and Histidine phosphatase superfamily, clade-1. Is an ortholog of C. elegans pgam-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13006a
CBG13006b
Corresponding_CDS_historyCBG13006:bp194
Corresponding_transcriptCBG13006a.1
CBG13006b.1
Other_sequence (57)
Experimental_infoExpr_patternExpr1052344
Microarray_resultsGPL8303_CB6_WBGene00033850_A
GPL8303_CB6_WBGene00033850_B
GPL14143_CBG13006_266-325_0.825_13_B
GPL14143_CBG13006_369-428_0.864_1_A
GPL14143_CBG13006_493-552_0.824_15_C
MethodGene