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WormBase Tree Display for Gene: WBGene00034054

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Name Class

WBGene00034054SMapS_parentSequencecb25.fpc2976
IdentityVersion2
NameCGC_nameCbr-xpb-1From_analysisInferred_from_orthology
Sequence_nameCBG13269
Molecular_nameCBG13269
CBG13269.1
CBP43898
Other_nameCBG_13269Accession_evidenceNDBHE601226
Public_nameCbr-xpb-1
DB_infoDatabaseNDBlocus_tagCBG_13269
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
221 Jul 2014 15:54:07WBPerson2970Name_changeCGC_nameCbr-xpb-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpb
RNASeq_FPKMWBls:000000219.9528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
23.7117From_analysisRNASeq.briggsae.WBls:0000002.control_mean
24.0438From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
27.1386From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
25.5912From_analysisRNASeq.briggsae.WBls:0000002.control_median
26.0715From_analysisRNASeq.briggsae.WBls:0000002.control_mean
33.1509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000332.4474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
33.1646From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
33.8817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
36.8469From_analysisRNASeq.briggsae.WBls:0000003.control_mean
44.2115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000413.9432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.5494From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.1556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
13.662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
14.2996From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
14.396From_analysisRNASeq.briggsae.WBls:0000004.control_mean
14.9195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.671135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.9683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.93866From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.52603From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.9564From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.13806From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.97413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.95191From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.0498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
13.2799From_analysisRNASeq.briggsae.WBls:0000038.control_mean
14.2821From_analysisRNASeq.briggsae.WBls:0000038.control_median
17.5144From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
20.1779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.37742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004126.5029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
43.8906From_analysisRNASeq.briggsae.WBls:0000041.control_mean
48.1668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
48.307From_analysisRNASeq.briggsae.WBls:0000041.control_median
48.4472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
52.4454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
35.9194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
43.0481From_analysisRNASeq.briggsae.WBls:0000041.control_mean
46.8072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
47.487From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006317.7921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
17.8605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
18.749From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
19.2901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
21.4211From_analysisRNASeq.briggsae.WBls:0000063.control_mean
33.4136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
19.0196From_analysisRNASeq.briggsae.WBls:0000063.control_median
23.0072From_analysisRNASeq.briggsae.WBls:0000063.control_mean
30.938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010117.7921From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.3107From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
17.8263From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.8656From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137512
00137513
00137514
00137515
00137516
00137517
Ortholog (28)
Structured_descriptionAutomated_descriptionPredicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be involved in nucleotide-excision repair and transcription initiation at RNA polymerase II promoter. Is an ortholog of C. elegans xpb-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13269
Corresponding_CDS_historyCBG13269:bp194
CBG13269:bp255
Corresponding_transcriptCBG13269.1
Other_sequence (95)
Experimental_infoExpr_patternExpr1068916
Microarray_resultsGPL8303_CB6_WBGene00034054_A
GPL8303_CB6_WBGene00034054_B
GPL14143_CBG13269_2046-2105_0.932_12_B
GPL14143_CBG13269_2123-2182_0.950_3_A
GPL14143_CBG13269_2197-2256_0.917_27_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene