WormBase Tree Display for Gene: WBGene00034615

WBGene00034615 SMap: S_parent: Sequence: cb25.fpc3835
  Identity: Version: 5
    Name: CGC_name: Cbr-spl-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG13938
      Molecular_name: CBG13938
        CBG13938.1
        CBP26889
      Other_name: CBG_13938 Accession_evidence: NDB HE601467
        Cbr-spl-3.2 From_analysis: Inferred_from_orthology
      Public_name: Cbr-spl-3
    DB_info: Database: NDB locus_tag CBG_13938
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:04 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 24 Jul 2008 11:56:36 WBPerson1847 Event: Acquires_merge: WBGene00034616
        3 08 Feb 2019 15:42:26 WBPerson1983 Name_change: CGC_name: Cbr-spl-3
        4 01 Oct 2019 10:47:49 WBPerson1983 Name_change: CGC_name: Cbr-spl-3.2
                Other_name: Cbr-spl-3
        5 27 Nov 2019 12:48:14 WBPerson1983 Name_change: CGC_name: Cbr-spl-3
                Other_name: Cbr-spl-3.2
      Acquires_merge: WBGene00034616
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spl
    RNASeq_FPKM: WBls:0000002 13.2198 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        20.494 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        21.546 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        30.9241 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        14.4043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        17.4492 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        19.7605 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 19.5227 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        20.0203 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        20.5179 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        19.4112 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        19.8173 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 12.7472 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        12.7719 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        12.7967 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        11.2014 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        13.3816 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        14.3858 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        15.7769 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 10.3922 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.96456 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        7.66972 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.65239 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        11.0527 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        21.2016 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        9.52229 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 24.2022 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 11.3271 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        20.8968 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        21.4136 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        31.5001 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        31.6158 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        9.14403 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 24.9817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        26.096 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        26.7016 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        26.7484 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        27.3072 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        28.6086 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        23.3268 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        25.3659 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        25.7309 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        25.9477 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 12.4594 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        12.5908 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        8.40723 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        8.45913 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        8.52683 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        10.4931 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        10.9219 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        23.4954 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 13.2198 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        16.9238 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        17.3515 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        17.594 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00138099
      00138100
      00138101
    Ortholog (32)
    Paralog: WBGene00024028 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028506 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030647 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031909 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035897 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037453 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038467 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042089 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable carbon-carbon lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in carboxylic acid metabolic process. Is an ortholog of C. elegans spl-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG13938
    Corresponding_CDS_history: CBG13938:bp194
    Corresponding_transcript: CBG13938.1
    Other_sequence (32)
  Experimental_info: Expr_pattern: Expr1059099
    Microarray_results: GPL8303_CB6_WBGene00034615_A
      GPL8303_CB6_WBGene00034616_A
      GPL14143_CBG13938_822-881_0.946_1_B
  Method: Gene