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WormBase Tree Display for Gene: WBGene00035030

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Name Class

WBGene00035030SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-set-30From_analysisInferred_from_orthology
Sequence_nameCBG14580
Molecular_nameCBG14580
CBG14580.1
CBP41521
Other_nameCBG_14580Accession_evidenceNDBHE600983
Public_nameCbr-set-30
DB_infoDatabaseNDBlocus_tagCBG_14580
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-set-30
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classset
RNASeq_FPKMWBls:000000210.1978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.34667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.99808From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.18085From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.58059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.78079From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.67237From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000034.4958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.03084From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.56587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
5.26428From_analysisRNASeq.briggsae.WBls:0000003.control_mean
5.73118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000430.2276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
31.027From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
31.8263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
25.8972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
27.4612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
28.9213From_analysisRNASeq.briggsae.WBls:0000004.control_mean
29.1944From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.960251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
10.2869From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.44521From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
27.4553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
10.8783From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.6526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
7.5489From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:00000359.69077From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.2556From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.4926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
13.6595From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.78699From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
31.3398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.01863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000411.53266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.04197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.59827From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.85736From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.15457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.70025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.11764From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.3604From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.56623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.71015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.20618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.34509From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.51154From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
4.45184From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.5559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.80474From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.98169From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.10301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.56587From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.56439From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.4017From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.9171From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (28)
ParalogWBGene00025962Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031506Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038902Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042791Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domain: Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans set-30.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14580
Corresponding_CDS_historyCBG14580:bp194
CBG14580:bp255
Corresponding_transcriptCBG14580.1
Other_sequenceBMC06420_1
JI168227.1
CJC13357_1
JI465669.1
JI464167.1
Experimental_infoExpr_patternExpr1067739
Microarray_resultsGPL8303_CB6_WBGene00035030_A
GPL8303_CB6_WBGene00035030_B
GPL8303_CB6_WBGene00035030_C
GPL8303_CB6_WBGene00035030_D
GPL8303_CB6_WBGene00035030_E
GPL14143_CBG14580_520-579_0.797_10_C
GPL14143_CBG14580_708-767_0.798_7_B
GPL14143_CBG14580_798-857_0.750_73_A
MethodGene