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WormBase Tree Display for Gene: WBGene00035081

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Name Class

WBGene00035081SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-vps-41From_analysisInferred_from_orthology
Sequence_nameCBG14653
Molecular_nameCBG14653
CBG14653.1
CBP39412
Other_nameCBG_14653Accession_evidenceNDBHE600983
Public_nameCbr-vps-41
DB_infoDatabaseNDBlocus_tagCBG_14653
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vps-41
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:00000025.15From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.30663From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.56547From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.20443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.58109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.07328From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.12525From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000322.0519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
23.4922From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
24.9325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
22.2285From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
23.071From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000412.945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
14.0108From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.0766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
11.9883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
13.1175From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
13.4352From_analysisRNASeq.briggsae.WBls:0000004.control_mean
14.0484From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.596493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.46682From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.09934From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.23471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.79387From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.85474From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.12092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.42706From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.488401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.2537From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.73576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.78495From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.83413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.95649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000413.44136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.71447From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.03853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.18971From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.3409From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
7.0371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.90289From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.17908From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.10881From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.15664From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.17316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.50583From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.00783From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.61322From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.73493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.12098From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.31052From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.19673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.56415From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.59969From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.07972From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.33564From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00138573
00138574
00138575
00138576
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to be involved in endosomal vesicle fusion and intracellular protein transport. Is an ortholog of C. elegans vps-41. In C. elegans, vps-41 is involved in negative regulation of apoptotic process; vacuolar protein processing; and vacuolar transport.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14653
Corresponding_CDS_historyCBG14653:bp194
CBG14653:bp205
CBG14653:bp255
Corresponding_transcriptCBG14653.1
Other_sequenceACC06274_1
JI469261.1
EY465118.1
EX563039.1
FC545715.1
Oden_isotig19465
JI465435.1
Acan_isotig07590
JI165304.1
EX557641.1
Experimental_infoExpr_patternExpr1058496
Microarray_resultsGPL8303_CB6_WBGene00035081_A
GPL8303_CB6_WBGene00035081_B
GPL14143_CBG14653_2016-2075_0.793_26_C
GPL14143_CBG14653_2421-2480_0.798_16_A
GPL14143_CBG14653_2634-2693_0.797_17_B
MethodGene