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WormBase Tree Display for Gene: WBGene00037668

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Name Class

WBGene00037668SMapS_parentSequencecb25.fpc4079b
IdentityVersion3
NameCGC_nameCbr-nca-2From_analysisInferred_from_orthology
Sequence_nameCBG18206
Molecular_nameCBG18206
CBG18206.1
CBP42746
Other_nameCBG_18206Accession_evidenceNDBHE600936
CBG_25988
Public_nameCbr-nca-2
DB_infoDatabaseNDBlocus_tagCBG_18206
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:51WBPerson2970Name_changeCGC_nameCbr-nca-2
331 Aug 2016 10:29:43WBPerson4025EventAcquires_mergeWBGene00087402
Acquires_mergeWBGene00087402
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnca
AlleleWBVar00126121
RNASeq_FPKMWBls:00000020.753657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.807521From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.875686From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.06588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.216677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.710934From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.780589From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.079794From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.345535From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.611275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.365783From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.406279From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.04713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.24206From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.43699From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.22304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.35104From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.37176From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.67629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.064379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.357774From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.42154From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.84246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.62855From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.79098From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.89932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.48552From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.098914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.640639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.909383From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.03667From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.4327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.46528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.1419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.205241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.228323From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.251405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.552394From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.61103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.758637From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.803924From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.26587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.3481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.176189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.213961From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.265055From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.425682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.509445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.243789From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.266482From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.273617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.640639From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.00573From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.780589From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.0486From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141155
00141156
00141157
00141158
00141159
Ortholog (34)
ParalogWBGene00027947Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00025194Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028228Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036666Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans nca-2. In C. elegans, nca-2 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18206
Corresponding_CDS_historyCBG18206:bp194
CBG18206:bp255
Corresponding_transcriptCBG18206.1
Other_sequence (26)
Experimental_infoExpr_patternExpr1051195
Expr1057570
Microarray_resultsGPL8303_CB6_WBGene00037668_A
GPL14143_CBG18206_4788-4847_0.721_381_C
GPL14143_CBG18206_4791-4850_0.753_262_B
GPL14143_CBG18206_4794-4853_0.774_176_A
GPL14143_CBG25988_11-70_0.952_1_A
MethodGene