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WormBase Tree Display for Gene: WBGene00037717

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Name Class

WBGene00037717SMapS_parentSequencecb25.fpc4079b
IdentityVersion2
NameCGC_nameCbr-toca-2From_analysisInferred_from_orthology
Sequence_nameCBG18267
Molecular_nameCBG18267a
CBG18267a.1
CBP41090
CBG18267b
CBP46568
CBG18267b.1
Other_nameCBG_18267Accession_evidenceNDBHE600936
Public_nameCbr-toca-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-toca-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtoca
RNASeq_FPKMWBls:000000214.9555From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.9586From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
17.543From_analysisRNASeq.briggsae.WBls:0000002.control_mean
21.7148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
18.8367From_analysisRNASeq.briggsae.WBls:0000002.control_median
20.9727From_analysisRNASeq.briggsae.WBls:0000002.control_mean
31.2617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000326.0889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
26.1509From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
26.2129From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
26.1563From_analysisRNASeq.briggsae.WBls:0000003.control_mean
26.167From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000414.537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.4143From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.2917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
12.4739From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.8912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
13.1504From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
13.8688From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.055484From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.396132From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.02664From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.62832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.763171From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.05254From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.13021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.48977From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.3961From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.24022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.23949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.37844From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.51738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.8483From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004136.4296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
44.7817From_analysisRNASeq.briggsae.WBls:0000041.control_mean
46.0052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
46.5266From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
49.6438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
42.0795From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
45.199From_analysisRNASeq.briggsae.WBls:0000041.control_mean
49.9878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006321.7131From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
21.9893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
22.3398From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
22.8471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
27.7542From_analysisRNASeq.briggsae.WBls:0000063.control_mean
49.8817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
22.1614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
22.2506From_analysisRNASeq.briggsae.WBls:0000063.control_median
26.8221From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010115.9586From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.8957From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
16.1252From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.4547From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
ParalogWBGene00036366Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-htz-1 and Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Fes/CIP4, and EFC/F-BAR homology domain; SH3-like domain superfamily; SH3 domain; AH/BAR domain superfamily; and FCH domain. Is an ortholog of C. elegans toca-2. In C. elegans, toca-2 is involved in several processes, including negative regulation of protein localization to adherens junction; positive regulation of egg-laying behavior; and regulation of cellular component organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18267a
CBG18267b
Corresponding_CDS_historyCBG18267:bp194
CBG18267:bp255
Corresponding_transcriptCBG18267a.1
CBG18267b.1
Other_sequenceCRC06437_1
CR07394
Experimental_infoExpr_patternExpr1056514
Microarray_resultsGPL8303_CB6_WBGene00037717_A
GPL8303_CB6_WBGene00037717_B
GPL8303_CB6_WBGene00037717_C
GPL14143_CBG18267_1249-1308_0.872_42_B
GPL14143_CBG18267_1376-1435_0.920_12_C
GPL14143_CBG18267_1978-2037_0.944_2_A
Expression_clusterWBPaper00059178:Cbr-htz-1(gu167)_upregulated
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene