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WormBase Tree Display for Gene: WBGene00037744

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Name Class

WBGene00037744SMapS_parentSequencecb25.fpc4079b
IdentityVersion3
NameCGC_nameCbr-vps-50From_analysisInferred_from_orthology
Sequence_nameCBG18297
Molecular_nameCBG18297
CBG18297.1
CBP10810
Other_nameCBG_18297Accession_evidenceNDBHE600936
Cbr-vesa-1From_analysisInferred_from_orthology
Public_nameCbr-vps-50
DB_infoDatabaseNDBlocus_tagCBG_18297
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
231 Aug 2012 11:59:53WBPerson2970Name_changeCGC_nameCbr-vesa-1
304 Jan 2016 15:57:05WBPerson2970Name_changeCGC_nameCbr-vps-50
Other_nameCbr-vesa-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000211.7755From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.3883From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
6.79011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
10.6966From_analysisRNASeq.briggsae.WBls:0000002.control_median
11.0828From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.00479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000314.229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
16.489From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
18.7491From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
13.872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
15.6167From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000420.6801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
21.2766From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
21.8732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
19.7684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.1363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
20.4905From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
20.5897From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.526061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
14.5344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.73334From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.59793From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.79574From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.66298From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.85814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.06516From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.3389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.7705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.11723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.29485From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.47247From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.17478From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004117.0201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.5258From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
17.7525From_analysisRNASeq.briggsae.WBls:0000041.control_median
17.9791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
18.2707From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.5578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
19.2684From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.7647From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.6819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
28.8233From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006313.5921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
6.44334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.48498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
7.92638From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
8.59824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.80901From_analysisRNASeq.briggsae.WBls:0000063.control_mean
10.3195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.26231From_analysisRNASeq.briggsae.WBls:0000063.control_median
9.06076From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.5047From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.3883From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.7524From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.5769From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00141234
00141235
00141236
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to be involved in endocytic recycling and retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is an ortholog of C. elegans vps-50. In C. elegans, vps-50 is involved in positive regulation of dense core granule transport and positive regulation of locomotion involved in locomotory behavior.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18297
Corresponding_CDS_historyCBG18297:bp194
Corresponding_transcriptCBG18297.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1061435
Microarray_resultsGPL8303_CB6_WBGene00037744_A
GPL8303_CB6_WBGene00037744_B
GPL14143_CBG18297_2507-2566_0.944_4_C
GPL14143_CBG18297_2630-2689_0.951_1_A
GPL14143_CBG18297_2736-2795_0.950_2_B
MethodGene