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WormBase Tree Display for Gene: WBGene00037989

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Name Class

WBGene00037989SMapS_parentSequencecb25.fpc4109
IdentityVersion2
NameCGC_nameCbr-lsm-5From_analysisInferred_from_orthology
Sequence_nameCBG18602
Molecular_nameCBG18602
CBG18602.1
CBP10928
Other_nameCBG_18602Accession_evidenceNDBHE601466
Public_nameCbr-lsm-5
DB_infoDatabaseNDBlocus_tagCBG_18602
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lsm-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlsm
RNASeq_FPKMWBls:0000002114.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
165.301From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
224.414From_analysisRNASeq.briggsae.WBls:0000002.control_mean
393.25From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
212.622From_analysisRNASeq.briggsae.WBls:0000002.control_median
233.296From_analysisRNASeq.briggsae.WBls:0000002.control_mean
259.943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003442.304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
704.612From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
966.921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
390.325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
599.85From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004319.673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
332.366From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
345.058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1103.65From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
348.85From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
580.812From_analysisRNASeq.briggsae.WBls:0000004.control_mean
786.829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027104.241From_analysisRNASeq.briggsae.WBls:0000027.control_mean
226.061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
43.301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
43.3616From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
134.711From_analysisRNASeq.briggsae.WBls:0000027.control_median
139.494From_analysisRNASeq.briggsae.WBls:0000027.control_mean
245.252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035268.318From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038260.214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
262.994From_analysisRNASeq.briggsae.WBls:0000038.control_mean
296.8From_analysisRNASeq.briggsae.WBls:0000038.control_median
333.386From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
368.777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
89.5986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041111.711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
225.906From_analysisRNASeq.briggsae.WBls:0000041.control_mean
255.082From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
259.866From_analysisRNASeq.briggsae.WBls:0000041.control_median
264.649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
272.182From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
127.868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
142.944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
195.739From_analysisRNASeq.briggsae.WBls:0000041.control_mean
199.013From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:0000063131.488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
145.787From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
150.401From_analysisRNASeq.briggsae.WBls:0000063.control_mean
152.013From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
322.719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
148.9From_analysisRNASeq.briggsae.WBls:0000063.control_median
156.12From_analysisRNASeq.briggsae.WBls:0000063.control_mean
184.716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101226.061From_analysisRNASeq.briggsae.total_over_all_stages.control_median
233.365From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
250.167From_analysisRNASeq.briggsae.total_over_all_stages.control_median
272.578From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: LSM domain; Sm-like protein LSm5; LSM domain, eukaryotic/archaea-type; and LSM domain superfamily. Is an ortholog of C. elegans lsm-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18602
Corresponding_CDS_historyCBG18602:bp194
Corresponding_transcriptCBG18602.1
Other_sequence (63)
Experimental_infoExpr_patternExpr1057072
Microarray_resultsGPL8303_CB6_WBGene00037989_A
GPL14143_CBG18602_17-76_0.952_3_A
GPL14143_CBG18602_90-149_0.947_6_C
GPL14143_CBG18602_176-235_0.965_1_B
MethodGene