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WormBase Tree Display for Gene: WBGene00038118

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Name Class

WBGene00038118SMapS_parentSequencecb25.fpc4118
IdentityVersion5
NameCGC_nameCbr-nkcc-1From_analysisInferred_from_orthology
Sequence_nameCBG18756
Molecular_nameCBG18756a
CBG18756a.1
CBP48347
CBG18756b
CBP48364
CBG18756b.1
Other_nameCBG_18756Accession_evidenceNDBHE601212
Public_nameCbr-nkcc-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nkcc-1
324 Jul 2008 11:56:35WBPerson1847EventAcquires_mergeWBGene00038119
431 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270613
528 Apr 2017 01:35:57WBPerson4025EventAcquires_mergeWBGene00270613
Acquires_mergeWBGene00038119
WBGene00270613
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnkcc
Allele (15)
RNASeq_FPKMWBls:000000212.4896From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.767From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
19.0925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.60935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.0558From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.2607From_analysisRNASeq.briggsae.WBls:0000002.control_median
18.7543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000310.4644From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
11.6181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
9.3107From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.8553From_analysisRNASeq.briggsae.WBls:0000003.control_mean
14.637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000417.9235From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
18.4636From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
19.0037From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
16.0506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
18.3614From_analysisRNASeq.briggsae.WBls:0000004.control_mean
18.6928From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.1364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000272.27327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
5.2239From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.80076From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.9051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.59452From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.09985From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.97581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.13079From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.5764From_analysisRNASeq.briggsae.WBls:0000038.control_mean
10.6807From_analysisRNASeq.briggsae.WBls:0000038.control_median
12.1955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
12.6032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.34096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.16587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004121.656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
22.2119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
22.4758From_analysisRNASeq.briggsae.WBls:0000041.control_median
22.5576From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.7397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
23.6227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.112From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
21.1213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
21.4106From_analysisRNASeq.briggsae.WBls:0000041.control_mean
21.934From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006316.8006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
18.8498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
20.1667From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.2861From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
20.5081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
24.3891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.3035From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.3971From_analysisRNASeq.briggsae.WBls:0000063.control_median
20.9871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010112.6032From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.6201From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.5119From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
15.9088From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00141610
00141611
00141612
00141613
Ortholog (35)
ParalogWBGene00027963Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028190Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033891Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033896Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035640Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans nkcc-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18756a
CBG18756b
Corresponding_CDS_historyCBG18756:bp194
CBG18756:bp255
CBG18756a:bp259
CBG18756b:bp259
Corresponding_transcriptCBG18756a.1
CBG18756b.1
Other_sequence (60)
Experimental_infoExpr_patternExpr1067414
Microarray_resultsGPL8303_CB6_WBGene00038118_A
GPL8303_CB6_WBGene00038119_A
GPL8303_CB6_WBGene00038119_B
GPL14143_CBG18756_3234-3293_0.748_97_C
GPL14143_CBG18756_3380-3439_0.942_2_B
GPL14143_CBG18756_3500-3559_0.730_115_A
MethodGene