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WormBase Tree Display for Gene: WBGene00038199

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Name Class

WBGene00038199SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-rme-1From_analysisInferred_from_orthology
Sequence_nameCBG18887
Molecular_nameCBG18887a
CBG18887a.1
CBP04447
CBG18887b
CBP47578
CBG18887c
CBP47671
CBG18887b.1
CBG18887c.1
Other_nameCBG_18887Accession_evidenceNDBHE601047
Public_nameCbr-rme-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rme-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrme
AlleleWBVar00138902
RNASeq_FPKMWBls:0000002116.156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
141.608From_analysisRNASeq.briggsae.WBls:0000002.control_mean
144.39From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
164.278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
134.231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
139.311From_analysisRNASeq.briggsae.WBls:0000002.control_median
139.764From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000349.6857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
51.4673From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
53.2488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
54.08From_analysisRNASeq.briggsae.WBls:0000003.control_mean
59.3055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000470.4479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
72.4724From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
74.4968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
75.1135From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
76.7204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
77.5612From_analysisRNASeq.briggsae.WBls:0000004.control_mean
91.0273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027145.417From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
32.0394From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
62.4271From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.82482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
200.219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
88.7282From_analysisRNASeq.briggsae.WBls:0000027.control_median
96.8751From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035161.501From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038132.737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
142.842From_analysisRNASeq.briggsae.WBls:0000038.control_mean
152.626From_analysisRNASeq.briggsae.WBls:0000038.control_median
172.515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
200.802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
65.3155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041179.471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
185.933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
192.173From_analysisRNASeq.briggsae.WBls:0000041.control_mean
192.665From_analysisRNASeq.briggsae.WBls:0000041.control_median
199.398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
203.89From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
169.818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
191.72From_analysisRNASeq.briggsae.WBls:0000041.control_mean
211.811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063106.715From_analysisRNASeq.briggsae.WBls:0000063.control_mean
127.187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
132.528From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
134.35From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
139.512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
115.495From_analysisRNASeq.briggsae.WBls:0000063.control_mean
133.439From_analysisRNASeq.briggsae.WBls:0000063.control_median
159.394From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101120.318From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
134.35From_analysisRNASeq.briggsae.total_over_all_stages.control_median
122.812From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
134.29From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (37)
ParalogWBGene00023808Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025548Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041985Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: EH domain-containing protein 1/3; EH domain-containing protein, N-terminal; Dynamin; EF-hand domain pair; Domain of unknown function DUF5600; Domain of unknown function (DUF5600); N-terminal EH-domain containing protein; EH domain; Dynamin family; P-loop containing nucleoside triphosphate hydrolase; and Cytoskeletal-regulatory complex EF hand. Is an ortholog of C. elegans rme-1. In C. elegans, rme-1 is involved in several processes, including endocytic recycling; lipid tube assembly involved in organelle fission; and necroptotic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18887a
CBG18887b
CBG18887c
Corresponding_transcriptCBG18887a.1
CBG18887b.1
CBG18887c.1
Other_sequence (117)
Experimental_infoExpr_patternExpr1061161
Microarray_resultsGPL8303_CB6_WBGene00038199_A
GPL8303_CB6_WBGene00038199_B
GPL8303_CB6_WBGene00038199_C
GPL8303_CB6_WBGene00038199_D
GPL8303_CB6_WBGene00038199_E
GPL14143_CBG18887_1419-1478_0.942_2_C
GPL14143_CBG18887_1554-1613_0.895_22_B
GPL14143_CBG18887_1793-1852_0.938_4_A
MethodGene