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WormBase Tree Display for Gene: WBGene00038222

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Name Class

WBGene00038222SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-ubr-5From_analysisInferred_from_orthology
Sequence_nameCBG18920
Molecular_nameCBG18920a
CBG18920a.1
CBP38081
CBG18920b
CBP47173
CBG18920b.1
Other_nameCBG_18920Accession_evidenceNDBHE601047
Public_nameCbr-ubr-5
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
208 Oct 2014 12:57:49WBPerson2970Name_changeCGC_nameCbr-ubr-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classubr
RNASeq_FPKMWBls:000000211.5679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
19.219From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.5513From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
23.5379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
23.0158From_analysisRNASeq.briggsae.WBls:0000002.control_mean
23.0446From_analysisRNASeq.briggsae.WBls:0000002.control_median
34.4059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000358.4402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
61.37From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
64.2998From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
63.6046From_analysisRNASeq.briggsae.WBls:0000003.control_mean
68.0737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000458.2149From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
58.4425From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
58.6701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
56.0158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
59.5705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
59.6704From_analysisRNASeq.briggsae.WBls:0000004.control_mean
65.8805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002714.6741From_analysisRNASeq.briggsae.WBls:0000027.control_mean
30.8412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.71546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.46553From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
12.205From_analysisRNASeq.briggsae.WBls:0000027.control_median
14.7417From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.9445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.2585From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.1357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
14.1412From_analysisRNASeq.briggsae.WBls:0000038.control_median
14.1467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
15.175From_analysisRNASeq.briggsae.WBls:0000038.control_mean
24.8278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.58986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004136.9443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
67.8009From_analysisRNASeq.briggsae.WBls:0000041.control_mean
77.059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
77.1834From_analysisRNASeq.briggsae.WBls:0000041.control_median
77.3078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
79.8925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
27.9627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
40.0715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
56.5396From_analysisRNASeq.briggsae.WBls:0000041.control_mean
58.5653From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
25.049From_analysisRNASeq.briggsae.WBls:0000063.control_mean
29.6373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
30.5378From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
32.5151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
32.5547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
20.9413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
24.3644From_analysisRNASeq.briggsae.WBls:0000063.control_mean
30.0875From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010123.5379From_analysisRNASeq.briggsae.total_over_all_stages.control_median
30.6428From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
28.8From_analysisRNASeq.briggsae.total_over_all_stages.control_median
33.5923From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141681
00141682
00141683
Ortholog (48)
ParalogWBGene00023888Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026237Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027645Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028166Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030270Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031373Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037746Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040510Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040860Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ubiquitin binding activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Is an ortholog of C. elegans ubr-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18920a
CBG18920b
Corresponding_CDS_historyCBG18920:bp194
CBG18920:bp255
Corresponding_transcriptCBG18920a.1
CBG18920b.1
Other_sequence (39)
Experimental_infoExpr_patternExpr1052393
Microarray_resultsGPL8303_CB6_WBGene00038222_A
GPL8303_CB6_WBGene00038222_B
GPL14143_CBG18920_8540-8599_0.946_2_C
GPL14143_CBG18920_8643-8702_0.933_4_B
GPL14143_CBG18920_8781-8840_0.904_14_A
MethodGene