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WormBase Tree Display for Gene: WBGene00038228

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Name Class

WBGene00038228SMapS_parentSequencecb25.fpc4126
IdentityVersion1
NameSequence_nameCBG18929
Molecular_nameCBG18929
CBG18929.1
CBP04453
Other_nameCBG_18929Accession_evidenceNDBHE601047
Public_nameCBG18929
DB_infoDatabaseNDBlocus_tagCBG_18929
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000213.7017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.8013From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.1775From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
17.5246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.9443From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.2755From_analysisRNASeq.briggsae.WBls:0000002.control_median
16.3735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000324.2364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
32.1745From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
40.1126From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
26.1865From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
30.1785From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000425.5085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
28.7081From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
31.9077From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
22.0846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
25.1705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
26.4666From_analysisRNASeq.briggsae.WBls:0000004.control_mean
27.6616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.349814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.4537From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
15.0747From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.62607From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.8844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
7.94065From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.16905From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:00000359.3656From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.339From_analysisRNASeq.briggsae.WBls:0000038.control_mean
12.8955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.16From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.4244From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
18.4807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.55548From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004113.3278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
27.5021From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.3907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
30.3378From_analysisRNASeq.briggsae.WBls:0000041.control_median
32.2849From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
36.0048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
16.024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
24.9383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
25.1618From_analysisRNASeq.briggsae.WBls:0000041.control_mean
26.6645From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006316.0386From_analysisRNASeq.briggsae.WBls:0000063.control_mean
18.8359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
18.8633From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
21.4908From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
17.4863From_analysisRNASeq.briggsae.WBls:0000063.control_mean
19.9331From_analysisRNASeq.briggsae.WBls:0000063.control_median
24.7251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010117.2461From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.3122From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.0026From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.4238From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (31)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Nucleolar pre-ribosomal-associated protein 1, C-terminal domain; Armadillo-type fold; Nucleolar pre-ribosomal-associated protein 1; and Armadillo-like helical. Is an ortholog of C. elegans T05H4.10.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18929
Corresponding_CDS_historyCBG18929:bp194
CBG18929:bp255
Corresponding_transcriptCBG18929.1
Other_sequence (12)
Experimental_infoExpr_patternExpr1054756
Microarray_resultsGPL8303_CB6_WBGene00038228_A
GPL8303_CB6_WBGene00038228_B
GPL14143_CBG18929_772-831_0.901_27_B
GPL14143_CBG18929_883-942_0.895_33_C
GPL14143_CBG18929_940-999_0.918_12_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene