Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00038250

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00038250SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-ubh-1From_analysisInferred_from_orthology
Sequence_nameCBG18954
Molecular_nameCBG18954
CBG18954.1
CBP36430
Other_nameCBG_18954Accession_evidenceNDBHE601047
Public_nameCbr-ubh-1
DB_infoDatabaseNDBlocus_tagCBG_18954
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ubh-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classubh
RNASeq_FPKMWBls:000000231.3331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
40.9062From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
40.9797From_analysisRNASeq.briggsae.WBls:0000002.control_mean
50.6998From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
42.9292From_analysisRNASeq.briggsae.WBls:0000002.control_mean
44.842From_analysisRNASeq.briggsae.WBls:0000002.control_median
48.7779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003103.821From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
116.405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
91.236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
111.266From_analysisRNASeq.briggsae.WBls:0000003.control_mean
126.157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000447.0368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
48.743From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
50.4493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
42.7676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
46.2348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
48.3629From_analysisRNASeq.briggsae.WBls:0000004.control_mean
55.3262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.49439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
20.0038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.2017From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.2333From_analysisRNASeq.briggsae.WBls:0000027.control_mean
13.8573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.5295From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.6393From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003516.6828From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.4926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
16.8612From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.2299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
18.3909From_analysisRNASeq.briggsae.WBls:0000038.control_mean
35.1391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.70195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004126.6043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
61.6182From_analysisRNASeq.briggsae.WBls:0000041.control_mean
72.5676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
72.9668From_analysisRNASeq.briggsae.WBls:0000041.control_median
73.3659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
73.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
23.1995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
29.8184From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
49.9151From_analysisRNASeq.briggsae.WBls:0000041.control_mean
51.193From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
24.9008From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.4584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
28.1804From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.2692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.5959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
28.0404From_analysisRNASeq.briggsae.WBls:0000063.control_mean
30.7248From_analysisRNASeq.briggsae.WBls:0000063.control_median
43.7388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010128.1804From_analysisRNASeq.briggsae.total_over_all_stages.control_median
33.9521From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
32.3012From_analysisRNASeq.briggsae.total_over_all_stages.control_median
37.2234From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141706
00141707
Ortholog (26)
ParalogWBGene00034125Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038249Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038251Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type deubiquitinase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans ubh-1. In C. elegans, ubh-1 is involved in negative regulation of dauer larval development; positive regulation of transforming growth factor beta receptor signaling pathway; and protein deneddylation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18954
Corresponding_CDS_historyCBG18954:bp194
Corresponding_transcriptCBG18954.1
Other_sequence (50)
Experimental_infoExpr_patternExpr1050716
Microarray_resultsGPL8303_CB6_WBGene00038250_A
GPL8303_CB6_WBGene00038250_B
GPL14143_CBG18954_109-168_0.651_37_A
GPL14143_CBG18954_250-309_0.883_9_B
GPL14143_CBG18954_610-669_0.910_5_C
MethodGene