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WormBase Tree Display for Gene: WBGene00038277

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Name Class

WBGene00038277SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-snb-1From_analysisInferred_from_orthology
Sequence_nameCBG18986
Molecular_nameCBG18986
CBG18986.1
CBP04522
Other_nameCBG_18986Accession_evidenceNDBHE601047
Public_nameCbr-snb-1
DB_infoDatabaseNDBlocus_tagCBG_18986
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-snb-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnb
RNASeq_FPKMWBls:0000002185.232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
210.606From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
281.308From_analysisRNASeq.briggsae.WBls:0000002.control_mean
448.085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
192.803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
201.704From_analysisRNASeq.briggsae.WBls:0000002.control_median
259.181From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003297.532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
321.697From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
345.861From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
325.08From_analysisRNASeq.briggsae.WBls:0000003.control_mean
331.846From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004240.416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
244.672From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
248.928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
251.232From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
270.275From_analysisRNASeq.briggsae.WBls:0000004.control_mean
281.567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
329.232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027166.95From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.6531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
380.812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
94.3861From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
180.39From_analysisRNASeq.briggsae.WBls:0000027.control_median
191.811From_analysisRNASeq.briggsae.WBls:0000027.control_mean
266.393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035201.11From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038174.298From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
214.1From_analysisRNASeq.briggsae.WBls:0000038.control_mean
234.852From_analysisRNASeq.briggsae.WBls:0000038.control_median
295.406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
302.29From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
84.406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041201.095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
223.037From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
229.372From_analysisRNASeq.briggsae.WBls:0000041.control_median
234.696From_analysisRNASeq.briggsae.WBls:0000041.control_mean
235.708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
278.943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
257.326From_analysisRNASeq.briggsae.WBls:0000041.control_median
282.206From_analysisRNASeq.briggsae.WBls:0000041.control_mean
305.896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
448.559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063103.918From_analysisRNASeq.briggsae.WBls:0000063.control_mean
115.464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
122.744From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
126.658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
154.723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
112.877From_analysisRNASeq.briggsae.WBls:0000063.control_mean
124.701From_analysisRNASeq.briggsae.WBls:0000063.control_median
157.674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101223.037From_analysisRNASeq.briggsae.total_over_all_stages.control_median
227.332From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
240.995From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
244.672From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00141733
00141734
Ortholog (27)
ParalogWBGene00041815Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00029935Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031925Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035646Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036545Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040962Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00271627Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans snb-1. In C. elegans, snb-1 is involved in several processes, including chemical synaptic transmission; defecation; and regulation of hindgut contraction.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18986
Corresponding_CDS_historyCBG18986:bp194
Corresponding_transcriptCBG18986.1
Other_sequence (92)
Experimental_infoExpr_patternExpr1059109
Microarray_resultsGPL8303_CB6_WBGene00038277_A
GPL8303_CB6_WBGene00038277_B
GPL14143_CBG18986_54-113_0.937_4_A
GPL14143_CBG18986_118-177_0.831_21_B
GPL14143_CBG18986_211-270_0.964_1_C
MethodGene