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WormBase Tree Display for Gene: WBGene00038348

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Name Class

WBGene00038348SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-mdt-6From_analysisInferred_from_orthology
Sequence_nameCBG19070
Molecular_nameCBG19070
CBG19070.1
CBP43242
Other_nameCBG_19070Accession_evidenceNDBHE601047
Public_nameCbr-mdt-6
DB_infoDatabaseNDBlocus_tagCBG_19070
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-mdt-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmdt
RNASeq_FPKMWBls:000000253.5987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
57.4081From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
59.111From_analysisRNASeq.briggsae.WBls:0000002.control_mean
66.3263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
61.8672From_analysisRNASeq.briggsae.WBls:0000002.control_median
64.5654From_analysisRNASeq.briggsae.WBls:0000002.control_mean
80.9285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003196.192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
210.178From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
224.164From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
220.818From_analysisRNASeq.briggsae.WBls:0000003.control_mean
242.098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000491.9571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
95.047From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
98.1369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
104.009From_analysisRNASeq.briggsae.WBls:0000004.control_mean
110.47From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
119.748From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
99.7327From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000271.1347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
19.9677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.90564From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.33601From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.8248From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.0983From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003519.6049From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.1496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
19.4934From_analysisRNASeq.briggsae.WBls:0000038.control_mean
20.3052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.8123From_analysisRNASeq.briggsae.WBls:0000038.control_median
21.3193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
26.1995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041102.261From_analysisRNASeq.briggsae.WBls:0000041.control_mean
111.916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
113.938From_analysisRNASeq.briggsae.WBls:0000041.control_median
115.96From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
119.596From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
61.5719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
101.424From_analysisRNASeq.briggsae.WBls:0000041.control_mean
109.436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
110.676From_analysisRNASeq.briggsae.WBls:0000041.control_median
90.063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
28.7941From_analysisRNASeq.briggsae.WBls:0000063.control_mean
32.6156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.2413From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
34.967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
43.1466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
32.9765From_analysisRNASeq.briggsae.WBls:0000063.control_mean
34.1041From_analysisRNASeq.briggsae.WBls:0000063.control_median
53.8885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010132.6743From_analysisRNASeq.briggsae.total_over_all_stages.control_median
53.7037From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
48.3727From_analysisRNASeq.briggsae.total_over_all_stages.control_median
65.2385From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141831
00141832
00141833
Ortholog (31)
ParalogWBGene00271268Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex. Is an ortholog of C. elegans mdt-6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19070
Corresponding_CDS_historyCBG19070:bp194
CBG19070:bp255
Corresponding_transcriptCBG19070.1
Other_sequence (22)
Experimental_infoExpr_patternExpr1050843
Microarray_resultsGPL8303_CB6_WBGene00038348_A
GPL8303_CB6_WBGene00038348_B
GPL8303_CB6_WBGene00038348_C
GPL14143_CBG19070_325-384_0.775_61_A
GPL14143_CBG19070_417-476_0.927_6_B
GPL14143_CBG19070_591-650_0.931_5_C
MethodGene