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WormBase Tree Display for Gene: WBGene00038408

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Name Class

WBGene00038408SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-ttc-17From_analysisInferred_from_orthology
Sequence_nameCBG19140
Molecular_nameCBG19140
CBG19140.1
CBP42681
Other_nameCBG_19140Accession_evidenceNDBHE601047
Public_nameCbr-ttc-17
DB_infoDatabaseNDBlocus_tagCBG_19140
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:27WBPerson1983Name_changeCGC_nameCbr-ttc-17
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttc
RNASeq_FPKMWBls:000000211.6466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.4103From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.3495From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.2347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.6028From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.498From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.18042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000326.3991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
30.5204From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
34.6417From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
28.735From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
29.9253From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000436.6486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
38.5797From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
40.5108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
34.0969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
37.3429From_analysisRNASeq.briggsae.WBls:0000004.control_mean
37.5648From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
37.8932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002710.0076From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.01503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
25.1411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.86668From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
10.6108From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.4204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.14354From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003523.3746From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.4496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
14.0624From_analysisRNASeq.briggsae.WBls:0000038.control_median
14.6751From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
18.0889From_analysisRNASeq.briggsae.WBls:0000038.control_mean
37.9727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.25835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000418.25117From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
8.34053From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.49892From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.51313From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.68574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
8.71823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
10.4181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
11.8581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.70199From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.37864From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.22647From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.36408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.63646From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.89002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.2418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.83476From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.76324From_analysisRNASeq.briggsae.WBls:0000063.control_median
8.87623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.4496From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.0009From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.935From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.1861From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (32)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Tetratricopeptide repeat and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans ttc-17.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19140
Corresponding_CDS_historyCBG19140:bp194
CBG19140:bp255
Corresponding_transcriptCBG19140.1
Other_sequence (23)
Experimental_infoExpr_patternExpr1069870
Microarray_resultsGPL8303_CB6_WBGene00038408_A
GPL8303_CB6_WBGene00038408_B
GPL14143_CBG19140_2642-2701_0.874_43_C
GPL14143_CBG19140_3075-3134_0.896_25_B
GPL14143_CBG19140_3312-3371_0.819_99_A
MethodGene