WormBase Tree Display for Gene: WBGene00038474

WBGene00038474 SMap: S_parent: Sequence: cb25.fpc4126
  Identity: Version: 2
    Name: CGC_name: Cbr-col-144 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19216
      Molecular_name: CBG19216
        CBG19216.1
        CBP11098
      Other_name: CBG_19216 Accession_evidence: NDB HE601047
      Public_name: Cbr-col-144
    DB_info: Database: NDB locus_tag CBG_19216
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-col-144
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    RNASeq_FPKM: WBls:0000002 1217.05 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        2557.48 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        497.454 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        596.206 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        1035.85 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        492.267 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        546.83 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        22.726 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        45.4519 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        17.5899 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        21.0139 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 10.6554 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        10.8615 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        11.0675 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        12.0186 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        13.3541 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        18.8038 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        46.9232 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 14595.6 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        17837.6 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1859.38 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        24089.7 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        12171.8 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        12573.2 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        6505.92 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 1161.62 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 2196.78 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        4698.19 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        5854.71 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        6317.81 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        7937.43 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        8586.45 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 101.193 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        103.218 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        21.3868 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        249.569 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        30.5979 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        66.908 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        51.6453 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        69.9856 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        88.3259 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        90.7905 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 108.617 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        61.3582 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        61.4444 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        67.7214 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        69.008 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        52.0073 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        5.25279 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        64.5829 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 249.569 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2671.51 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2229.13 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        96.4549 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00141955
    Ortholog (78)
    Paralog (12)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-144. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19216
    Corresponding_CDS_history: CBG19216:bp194
    Corresponding_transcript: CBG19216.1
    Other_sequence (57)
  Experimental_info: Expr_pattern: Expr1059824
    Microarray_results: GPL8303_CB6_WBGene00038474_A
      GPL14143_CBG19216_200-259_0.913_1_A
  Method: Gene