WormBase Tree Display for Gene: WBGene00038475

WBGene00038475 SMap: S_parent: Sequence: cb25.fpc4126
  Identity: Version: 3
    Name: CGC_name: Cbr-col-145 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19217
      Molecular_name: CBG19217
        CBG19217.1
        CBP43255
      Other_name: CBG_19217 Accession_evidence: NDB HE601047
      Public_name: Cbr-col-145
    DB_info: Database: NDB locus_tag CBG_19217
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-col-145
        3 31 Aug 2016 10:30:13 WBPerson4025 Event: Split_into: WBGene00270693
      Split_into: WBGene00270693
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    RNASeq_FPKM: WBls:0000002 102.875 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        110.474 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        141.541 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        87.006 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        6.79163 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        84.5534 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        94.9405 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 1.04832 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        2.09663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.698877 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0.470957 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0.515885 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.560813 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.263135 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.383571 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.501306 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.828056 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 10.2684 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        116.653 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        19.3224 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        21.016 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        2.20373 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        22.4695 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        36.3696 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        40.2222 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        5.66236 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        12.1792 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        16.6637 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        24.0301 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 121.624 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        138.191 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        197.243 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        29.4376 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        103.194 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        108.267 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        68.1969 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 8.75298 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 143.422 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        171.96 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        243.171 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        263.611 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        314.381 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        424.679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 25.8436 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        32.6294 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        41.9714 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        6.58192 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        72.2484 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        9.71582 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        14.9379 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        20.16 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        25.9167 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.82253 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        34.9747 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        37.5134 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        38.731 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        47.387 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        51.2421 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.58049 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        29.409 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        38.1222 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 38.731 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        76.8585 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        24.7988 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        61.3664 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00141956
    Ortholog: WBGene00000718 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00093063 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00177149 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00138461 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00121611 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00124289 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00159676 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g1744 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g1745 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g1746 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14354 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g6203 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5159 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4637 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18146 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26157 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g26158 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g12378 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2138 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2151 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g7010 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g23080 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g366 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00424.g10674 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g20129 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16870 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_06296.g36343 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_017173 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01731 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12367 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11816 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g18926 Panagrellus redivivus From_analysis: WormBase-Compara
      WBGene00221975 Brugia malayi From_analysis: WormBase-Compara
      WBGene00223115 Brugia malayi From_analysis: WormBase-Compara
      chrV_pilon.g15187 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00127556 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210360 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00246154 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00095974 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259395 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00261024 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00261472 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00262484 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00264000 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00028389 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00037494 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00025131 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025882 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029499 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031126 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032951 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033002 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033419 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038474 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040605 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270693 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-145. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19217
    Corresponding_CDS_history: CBG19217:bp213
      CBG19217:bp255
    Corresponding_transcript: CBG19217.1
    Other_sequence: FC816596.1
      FC816515.1
      EX535682.1
      DN190678.1
      DN190485.1
      FC817401.1
      SRC10366_1
      JI461984.1
      CR12319
      AAC00483_1
      AA675929.1
      DN190893.1
      SRC07453_1
      FC817658.1
      DN190974.1
      DN191339.1
      DN190512.1
      CJC01972_1
      DN191288.1
      TCC02403_1
      DN190895.1
      ASC02015_1
      AM744400.1
      FC810882.1
      AAC00255_1
      HGC02951_1
      HC01152
      CRC05724_1
      CGC00282_1
      HG07490
      TX00089
      HG03197
      TDC02423_1
      SSC05415_1
      DN191216.1
      DN191273.1
  Experimental_info: Expr_pattern: Expr1057708
    Microarray_results: GPL8303_CB6_WBGene00038475_A
      GPL8303_CB6_WBGene00038475_B
      GPL14143_CBG19217_200-259_0.905_1_A
  Method: Gene