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WormBase Tree Display for Gene: WBGene00038478

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Name Class

WBGene00038478SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-spas-1From_analysisInferred_from_orthology
Sequence_nameCBG19220
Molecular_nameCBG19220a
CBG19220a.1
CBP39759
CBG19220b
CBP04464
CBG19220b.1
Other_nameCBG_19220Accession_evidenceNDBHE601047
Public_nameCbr-spas-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-spas-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspas
RNASeq_FPKMWBls:000000234.3402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
35.6264From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
39.3962From_analysisRNASeq.briggsae.WBls:0000002.control_mean
48.222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
41.9242From_analysisRNASeq.briggsae.WBls:0000002.control_median
45.1436From_analysisRNASeq.briggsae.WBls:0000002.control_mean
62.3856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000398.4825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
98.6697From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
98.857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
100.629From_analysisRNASeq.briggsae.WBls:0000003.control_mean
104.548From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000452.7357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
54.7001From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
56.6645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
51.0222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
53.3931From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
54.2653From_analysisRNASeq.briggsae.WBls:0000004.control_mean
57.5109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.649674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
10.0521From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.6924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.81411From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
10.8905From_analysisRNASeq.briggsae.WBls:0000027.control_mean
13.4057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.10991From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003510.6284From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.8008From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.0796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.269From_analysisRNASeq.briggsae.WBls:0000038.control_median
17.4584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
24.4973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.16809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004144.4872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
81.4724From_analysisRNASeq.briggsae.WBls:0000041.control_mean
92.093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
93.1234From_analysisRNASeq.briggsae.WBls:0000041.control_median
94.1538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
95.1557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
63.4127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
72.7681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
77.0117From_analysisRNASeq.briggsae.WBls:0000041.control_mean
82.4305From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.5332From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.5878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
26.4001From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
26.6163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
29.0618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
24.2732From_analysisRNASeq.briggsae.WBls:0000063.control_mean
26.5082From_analysisRNASeq.briggsae.WBls:0000063.control_median
37.9733From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010126.4001From_analysisRNASeq.briggsae.total_over_all_stages.control_median
35.6374From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
31.701From_analysisRNASeq.briggsae.total_over_all_stages.control_median
40.7869From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141967
00141968
Ortholog (27)
ParalogWBGene00026270Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026828Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040545Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040714Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and ATP hydrolysis activity. Is an ortholog of C. elegans spas-1. In C. elegans, spas-1 is involved in several processes, including microtubule cytoskeleton organization; positive regulation of microtubule depolymerization; and vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19220a
CBG19220b
Corresponding_CDS_historyCBG19220:bp194
CBG19220:bp255
Corresponding_transcriptCBG19220a.1
CBG19220b.1
Other_sequence (28)
Experimental_infoExpr_patternExpr1064205
Microarray_resultsGPL8303_CB6_WBGene00038478_A
GPL8303_CB6_WBGene00038478_B
GPL8303_CB6_WBGene00038478_C
GPL14143_CBG19220_1172-1231_0.897_11_C
GPL14143_CBG19220_1268-1327_0.915_5_B
GPL14143_CBG19220_1472-1531_0.935_1_A
MethodGene