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WormBase Tree Display for Gene: WBGene00038487

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Name Class

WBGene00038487SMapS_parentSequencecb25.fpc4126
IdentityVersion4
NameCGC_nameCbr-pacs-1From_analysisInferred_from_orthology
Sequence_nameCBG19229
Molecular_nameCBG19229
CBG19229.1
CBP04470
Other_nameCBG_19229Accession_evidenceNDBHE601047
Cbr-tag-232
Public_nameCbr-pacs-1
DB_infoDatabaseNDBlocus_tagCBG_19229
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tag-232
303 Jul 2018 11:45:27WBPerson1983Name_changeCGC_nameRetired non-elegans tag gene names
401 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCbr-pacs-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpacs
RNASeq_FPKMWBls:000000219.8199From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
20.529From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
20.8254From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.1272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
21.3281From_analysisRNASeq.briggsae.WBls:0000002.control_median
22.0662From_analysisRNASeq.briggsae.WBls:0000002.control_mean
25.7889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000331.8029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
31.9116From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
32.0202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
29.8835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
31.2355From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000453.0054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
53.6889From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
54.3725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
50.697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
51.0711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
53.4649From_analysisRNASeq.briggsae.WBls:0000004.control_mean
58.1787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002710.8426From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.86821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
25.81From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.84946From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.1809From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.5227From_analysisRNASeq.briggsae.WBls:0000027.control_median
24.196From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003519.8376From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.5558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
14.7714From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.2039From_analysisRNASeq.briggsae.WBls:0000038.control_median
17.852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.5186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.15925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004127.5632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
30.919From_analysisRNASeq.briggsae.WBls:0000041.control_mean
31.0291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
31.6947From_analysisRNASeq.briggsae.WBls:0000041.control_median
32.3602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
32.7235From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
27.4357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
30.4272From_analysisRNASeq.briggsae.WBls:0000041.control_mean
31.2404From_analysisRNASeq.briggsae.WBls:0000041.control_median
31.4517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006313.8468From_analysisRNASeq.briggsae.WBls:0000063.control_mean
16.6165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
16.6244From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
16.9788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
19.0142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
15.0681From_analysisRNASeq.briggsae.WBls:0000063.control_mean
16.8016From_analysisRNASeq.briggsae.WBls:0000063.control_median
21.1749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010119.8376From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.3843From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.6511From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.7375From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (30)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: PACS-1 cytosolic sorting protein and Phosphofurin acidic cluster sorting protein 1. Is an ortholog of C. elegans pacs-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19229
Corresponding_CDS_historyCBG19229:bp194
CBG19229:bp255
Corresponding_transcriptCBG19229.1
Other_sequenceCGC00340_1
JI163842.1
CGC00543_1
BUC01918_1
JI164658.1
Dviv_isotig23357
CBC17782_1
Experimental_infoExpr_patternExpr1057715
Microarray_resultsGPL8303_CB6_WBGene00038487_A
GPL8303_CB6_WBGene00038487_B
GPL14143_CBG19229_1699-1758_0.896_34_A
GPL14143_CBG19229_2063-2122_0.828_95_C
GPL14143_CBG19229_2471-2530_0.970_1_B
MethodGene