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WormBase Tree Display for Gene: WBGene00038506

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Name Class

WBGene00038506SMapS_parentSequencecb25.fpc4126
IdentityVersion3
NameSequence_nameCBG19250
Molecular_nameCBG19250a
CBG19250a.1
CBP43474
CBG19250b
CBP46010
CBG19250b.1
Other_nameCBG_19250Accession_evidenceNDBHE601047
Cbr-tag-153
Public_nameCBG19250
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-tag-153
303 Jul 2018 11:45:27WBPerson1983Name_changeCGC_nameRetired non-elegans tag gene names
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00026362
WBVar00025814
WBVar00057094
RNASeq_FPKMWBls:000000232.7285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.3533From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.0857From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
44.2458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
42.6657From_analysisRNASeq.briggsae.WBls:0000002.control_median
42.9746From_analysisRNASeq.briggsae.WBls:0000002.control_mean
53.8384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000339.3659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
40.4095From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
41.4531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
43.8569From_analysisRNASeq.briggsae.WBls:0000003.control_mean
50.7518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000415.2654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.905From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.5446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
14.3997From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
16.5569From_analysisRNASeq.briggsae.WBls:0000004.control_mean
16.6548From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
19.9199From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.425398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
10.9789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.66382From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.68937From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.55219From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.12717From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.44055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.1859From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.8914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
13.069From_analysisRNASeq.briggsae.WBls:0000038.control_median
14.1186From_analysisRNASeq.briggsae.WBls:0000038.control_mean
15.2467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
22.8918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.44446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041105.736From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
66.6661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
91.7319From_analysisRNASeq.briggsae.WBls:0000041.control_mean
95.359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
97.2628From_analysisRNASeq.briggsae.WBls:0000041.control_median
99.1666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
66.7935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
69.8593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
82.6092From_analysisRNASeq.briggsae.WBls:0000041.control_median
83.9301From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
47.6292From_analysisRNASeq.briggsae.WBls:0000063.control_mean
54.578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
57.9023From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
59.9955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
65.6701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
48.4986From_analysisRNASeq.briggsae.WBls:0000063.control_mean
52.8456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
56.2402From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010116.5446From_analysisRNASeq.briggsae.total_over_all_stages.control_median
32.9561From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.4058From_analysisRNASeq.briggsae.total_over_all_stages.control_median
34.4008From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142000
00142001
Ortholog (21)
ParalogWBGene00026485Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034080Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in regulation of DNA-templated transcription. Predicted to be part of CCR4-NOT core complex. Is an ortholog of C. elegans tag-153.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19250a
CBG19250b
Corresponding_CDS_historyCBG19250:bp194
CBG19250:bp255
Corresponding_transcriptCBG19250a.1
CBG19250b.1
Other_sequenceCRC04393_1
CBC02676_1
CR05548
CBC03255_1
CRC07218_1
EX535187.1
BMC07243_1
CR05720
CBC14117_1
Experimental_infoExpr_patternExpr1052682
Microarray_resultsGPL8303_CB6_WBGene00038506_A
GPL8303_CB6_WBGene00038506_B
GPL14143_CBG19250_1878-1937_0.921_6_C
GPL14143_CBG19250_2026-2085_0.917_7_B
GPL14143_CBG19250_2136-2195_0.949_3_A
Expression_clusterWBPaper00059178:Cbr-htz-1(gu167)_upregulated
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene