WormBase Tree Display for Gene: WBGene00038534

WBGene00038534 SMap: S_parent: Sequence: cb25.fpc4126
  Identity: Version: 2
    Name: CGC_name: Cbr-swt-5 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19287
      Molecular_name: CBG19287
        CBG19287.1
        CBP19465
      Other_name: CBG_19287 Accession_evidence: NDB HE601047
      Public_name: Cbr-swt-5
    DB_info: Database: NDB locus_tag CBG_19287
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 30 Nov 2010 15:54:54 WBPerson2970 Name_change: CGC_name: Cbr-swt-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: swt
    RNASeq_FPKM: WBls:0000002 11.1065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        5.73093 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        7.07166 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        7.9697 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.47531 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        6.4013 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        7.0961 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.378019 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        2.15016 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        3.92231 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        2.15829 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        2.17454 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 15.8306 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        19.8359 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        23.8412 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        15.6741 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        16.7457 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        19.0555 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        23.1857 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 0.294752 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        0.906472 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        1.08594 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        1.1876 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        12.8519 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        1.28925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        3.88046 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        1.17644 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 11.069 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.1073 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        25.5369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        5.56288 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        13.2772 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        13.5497 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        20.9916 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 5.22422 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 11.4473 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        11.4915 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        15.709 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        17.8728 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        5.19857 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        7.18552 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 0.211561 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.392762 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.534567 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.676372 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1.1282 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.23212 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.970481 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.21341 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1.26459 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        1.50308 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.639522 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.867179 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.951482 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.16636 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.57853 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.275879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.768629 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.795502 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 3.23212 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.09134 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        3.57721 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.91946 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00142037
    Ortholog (26)
    Structured_description: Automated_description: Predicted to be located in membrane. Is an ortholog of C. elegans swt-5. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19287
    Corresponding_CDS_history: CBG19287:bp194
    Corresponding_transcript: CBG19287.1
    Other_sequence: EX912370.1
      HBC13847_1
      GO250819.1
      JI178930.1
      Tcir_isotig29513
      GO252409.1
  Experimental_info: Expr_pattern: Expr1053961
    Microarray_results: GPL8303_CB6_WBGene00038534_A
      GPL8303_CB6_WBGene00038534_B
      GPL14143_CBG19287_56-115_0.804_27_C
      GPL14143_CBG19287_141-200_0.920_2_B
      GPL14143_CBG19287_232-291_0.918_4_A
  Method: Gene