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WormBase Tree Display for Gene: WBGene00038553

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Name Class

WBGene00038553SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-nstp-10From_analysisInferred_from_orthology
Sequence_nameCBG19307
Molecular_nameCBG19307
CBG19307.1
CBP30043
Other_nameCBG_19307Accession_evidenceNDBHE601047
Public_nameCbr-nstp-10
DB_infoDatabaseNDBlocus_tagCBG_19307
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
211 Feb 2011 15:56:39WBPerson2970Name_changeCGC_nameCbr-nstp-10
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnstp
RNASeq_FPKMWBls:000000210.7104From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
12.284From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.8576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
9.28402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.00716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
9.4648From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.99721From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000310.5371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
11.1314From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
11.7258From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
11.9476From_analysisRNASeq.briggsae.WBls:0000003.control_mean
13.58From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000417.1818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
22.4653From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
27.7489From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
19.4009From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
22.3946From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
22.4085From_analysisRNASeq.briggsae.WBls:0000004.control_mean
25.3162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (11)
WBls:00000270.253573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.321683From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
15.9414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.50555From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.22418From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.12668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.16083From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000358.41099From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.538627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
11.7876From_analysisRNASeq.briggsae.WBls:0000038.control_median
14.5916From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.3737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
34.2526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.20152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004115.2286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.1351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
18.0021From_analysisRNASeq.briggsae.WBls:0000041.control_median
18.2091From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.8691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.6037From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
12.2977From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
15.8213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.4782From_analysisRNASeq.briggsae.WBls:0000041.control_median
16.8259From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006313.4895From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.5257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
14.9737From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
17.2376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.7106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
14.3454From_analysisRNASeq.briggsae.WBls:0000063.control_mean
16.1056From_analysisRNASeq.briggsae.WBls:0000063.control_median
18.6248From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010112.7858From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.5257From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.2463From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.2768From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (29)
ParalogWBGene00024986Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032365Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035315Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037148Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Triose-phosphate Transporter family and Sugar phosphate transporter domain. Is an ortholog of C. elegans nstp-10.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19307
Corresponding_CDS_historyCBG19307:bp194
Corresponding_transcriptCBG19307.1
Other_sequence (39)
Experimental_infoExpr_patternExpr1061556
Microarray_resultsGPL8303_CB6_WBGene00038553_A
GPL8303_CB6_WBGene00038553_C
GPL14143_CBG19307_482-541_0.924_8_C
GPL14143_CBG19307_663-722_0.704_110_B
GPL14143_CBG19307_794-853_0.958_1_A
MethodGene