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WormBase Tree Display for Gene: WBGene00038846

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Name Class

WBGene00038846SMapS_parentSequencecb25.fpc4132b
IdentityVersion2
NameCGC_nameCbr-vps-16From_analysisInferred_from_orthology
Sequence_nameCBG19671
Molecular_nameCBG19671
CBG19671.1
CBP41531
Other_nameCBG_19671Accession_evidenceNDBHE600934
Public_nameCbr-vps-16
DB_infoDatabaseNDBlocus_tagCBG_19671
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vps-16
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000211.5854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
16.5449From_analysisRNASeq.briggsae.WBls:0000002.control_mean
18.0562From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
19.993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
14.7956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
16.1075From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.4259From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000318.1015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
19.0033From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
19.9052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
19.0177From_analysisRNASeq.briggsae.WBls:0000003.control_mean
19.0463From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000411.9598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
12.2015From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
12.4431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
10.7113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
11.2665From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
11.6665From_analysisRNASeq.briggsae.WBls:0000004.control_mean
11.9518From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.12176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.11346From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.88974From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.38604From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.58196From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.65863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003512.732From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.7282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
11.1981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.58675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.65506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
8.29203From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.19163From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:000004114.2788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
30.229From_analysisRNASeq.briggsae.WBls:0000041.control_mean
33.5203From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
34.2541From_analysisRNASeq.briggsae.WBls:0000041.control_median
34.9878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
38.1289From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
16.5956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
19.2613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
26.1288From_analysisRNASeq.briggsae.WBls:0000041.control_mean
26.3908From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006310.6174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
11.7453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.80994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
8.78079From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
9.31289From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
9.65326From_analysisRNASeq.briggsae.WBls:0000063.control_mean
10.8188From_analysisRNASeq.briggsae.WBls:0000063.control_mean
16.6467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
9.96515From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010111.5854From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.3075From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
11.8485From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.5224From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142315
00142316
00142317
Ortholog (28)
Structured_descriptionAutomated_descriptionPredicted to be involved in intracellular protein transport and vacuole organization. Predicted to be located in cytoplasm. Is an ortholog of C. elegans vps-16. In C. elegans, vps-16 is involved in digestive tract development and embryo development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19671
Corresponding_CDS_historyCBG19671:bp194
CBG19671:bp255
Corresponding_transcriptCBG19671.1
Other_sequence (17)
Experimental_infoExpr_patternExpr1061417
Microarray_resultsGPL8303_CB6_WBGene00038846_A
GPL14143_CBG19671_2063-2122_0.912_18_C
GPL14143_CBG19671_2189-2248_0.953_1_B
GPL14143_CBG19671_2348-2407_0.941_4_A
MethodGene