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WormBase Tree Display for Gene: WBGene00039192

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Name Class

WBGene00039192SMapS_parentSequencecb25.fpc4153
IdentityVersion2
NameCGC_nameCbr-gtf-2A2From_analysisInferred_from_orthology
Sequence_nameCBG20129
Molecular_nameCBG20129
CBG20129.1
CBP31513
Other_nameCBG_20129Accession_evidenceNDBHE601175
Public_nameCbr-gtf-2A2
DB_infoDatabaseNDBlocus_tagCBG_20129
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCbr-gtf-2A2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
RNASeq_FPKMWBls:000000211.2952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.7152From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.0563From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.1586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.2202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
13.0052From_analysisRNASeq.briggsae.WBls:0000002.control_median
13.8473From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000035.76007From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
6.63704From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
7.51401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
6.82727From_analysisRNASeq.briggsae.WBls:0000003.control_mean
7.20773From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.2879From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
11.3564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
9.21948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
11.9121From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
16.1568From_analysisRNASeq.briggsae.WBls:0000004.control_mean
18.5169From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
29.7792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.80385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
21.4364From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.54547From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
56.9599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
11.1992From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.8529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
20.2905From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003518.8005From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.7552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.2562From_analysisRNASeq.briggsae.WBls:0000038.control_median
15.7571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
27.9643From_analysisRNASeq.briggsae.WBls:0000038.control_mean
75.4357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.90933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004110.7806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
11.2065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
12.2008From_analysisRNASeq.briggsae.WBls:0000041.control_median
12.5893From_analysisRNASeq.briggsae.WBls:0000041.control_mean
13.1952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
15.1751From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
14.1592From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.1232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.3635From_analysisRNASeq.briggsae.WBls:0000041.control_mean
32.7002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006310.54From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
15.7431From_analysisRNASeq.briggsae.WBls:0000063.control_mean
42.2036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.10374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
8.95531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
9.91308From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
10.1314From_analysisRNASeq.briggsae.WBls:0000063.control_median
10.3497From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
14.8442From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.2952From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.5125From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
11.6342From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.3822From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142661
00142662
Ortholog (28)
ParalogWBGene00030672Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be part of transcription factor TFIIA complex. Is an ortholog of C. elegans gtf-2A2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20129
Corresponding_CDS_historyCBG20129:bp194
Corresponding_transcriptCBG20129.1
Other_sequence (25)
Experimental_infoExpr_patternExpr1053166
Microarray_resultsGPL8303_CB6_WBGene00039192_A
GPL8303_CB6_WBGene00039192_B
GPL14143_CBG20129_7-66_0.935_4_B
GPL14143_CBG20129_204-263_0.952_1_C
GPL14143_CBG20129_253-312_0.688_39_A
MethodGene