Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00039193

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00039193SMapS_parentSequencecb25.fpc4153
IdentityVersion3
NameCGC_nameCbr-pqn-80From_analysisInferred_from_orthology
Sequence_nameCBG20130
Molecular_nameCBG20130a
CBG20130a.1
CBP40756
CBG20130b
CBP39762
CBG20130c
CBP45259
CBG20130b.1
CBG20130c.1
Other_nameCBG_20130Accession_evidenceNDBHE601175
Public_nameCbr-pqn-80
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-pqn-80
324 Jul 2008 11:56:33WBPerson1847EventAcquires_mergeWBGene00039194
Acquires_mergeWBGene00039194
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpqn
RNASeq_FPKMWBls:000000211.3352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.61792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.21856From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.70257From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.95982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.15388From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.33119From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000322.2133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
26.188From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
30.1626From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
26.129From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
26.1683From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000414.5857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.103From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.6202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
15.8844From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
16.0947From_analysisRNASeq.briggsae.WBls:0000004.control_mean
16.9592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
17.424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.845027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.44009From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.54361From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.34572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.90286From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.21034From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.98059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.24554From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000384.43847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.33983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.91089From_analysisRNASeq.briggsae.WBls:0000038.control_median
6.20962From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.48196From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.57822From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004113.0075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
15.2458From_analysisRNASeq.briggsae.WBls:0000041.control_mean
15.4703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
15.5507From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.6311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
16.8743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
10.6871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
14.3811From_analysisRNASeq.briggsae.WBls:0000041.control_mean
14.6162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
15.0433From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006311.0589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.17382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.84133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.97328From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.22643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
8.45475From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.8166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
7.9073From_analysisRNASeq.briggsae.WBls:0000063.control_median
8.34839From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001017.70257From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.39196From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.3638From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.9073From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00142663
00142664
Ortholog (17)
ParalogWBGene00025376Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in regulation of DNA-templated transcription. Predicted to be part of RSF complex. Is an ortholog of C. elegans pqn-80.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20130a
CBG20130b
CBG20130c
Corresponding_CDS_historyCBG20130:bp194
CBG20130:bp255
Corresponding_transcriptCBG20130a.1
CBG20130b.1
CBG20130c.1
Other_sequenceMJC03636_1
MH04260
JI469125.1
JI468101.1
Experimental_infoExpr_patternExpr1068942
Microarray_resultsGPL8303_CB6_WBGene00039193_A
GPL8303_CB6_WBGene00039193_B
GPL8303_CB6_WBGene00039194_A
GPL14143_CBG20130_82-141_0.556_501_C
GPL14143_CBG20130_252-311_0.796_94_B
GPL14143_CBG20130_358-417_0.772_137_A
MethodGene