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WormBase Tree Display for Gene: WBGene00039201

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Name Class

WBGene00039201SMapS_parentSequencecb25.fpc4153
IdentityVersion2
NameCGC_nameCbr-amx-1From_analysisInferred_from_orthology
Sequence_nameCBG20142
Molecular_nameCBG20142a
CBG20142a.1
CBP49223
CBG20142b
CBP48823
CBG20142b.1
Other_nameCBG_20142Accession_evidenceNDBHE601175
Public_nameCbr-amx-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-amx-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classamx
RNASeq_FPKMWBls:000000212.0456From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.3757From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.69948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
18.0617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
12.4234From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.5566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
14.9662From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000356.1516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
58.3709From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
60.5903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
61.9466From_analysisRNASeq.briggsae.WBls:0000003.control_mean
69.0979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000422.9716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
24.335From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
25.6984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
16.9451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
22.3712From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.7945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
23.4463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.20743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.53759From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.59068From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.02701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.09294From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.10508From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.64828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.82789From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.2991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.4323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.6343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.44734From_analysisRNASeq.briggsae.WBls:0000038.control_median
6.65652From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.26038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004131.3832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
39.0804From_analysisRNASeq.briggsae.WBls:0000041.control_mean
39.0832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
40.0931From_analysisRNASeq.briggsae.WBls:0000041.control_median
41.103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
44.7521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
24.2423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
34.5477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
35.8519From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.8154From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006313.3758From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.1572From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.2704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
14.2711From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
14.3467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
14.5218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
14.3089From_analysisRNASeq.briggsae.WBls:0000063.control_median
15.0556From_analysisRNASeq.briggsae.WBls:0000063.control_mean
19.5478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.3758From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.4042From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.3089From_analysisRNASeq.briggsae.total_over_all_stages.control_median
19.3302From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142675
Ortholog (35)
ParalogWBGene00027980Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029850Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029889Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030975Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038984Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041792Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable oxidoreductase activity. Is an ortholog of C. elegans amx-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20142a
CBG20142b
Corresponding_CDS_historyCBG20142:bp194
CBG20142:bp265
Corresponding_transcriptCBG20142a.1
CBG20142b.1
Other_sequenceAcan_isotig08028
CRC05871_1
Oden_isotig11940
EX537948.1
Oden_isotig11942
CR04179
JI166876.1
ACC06450_1
Oden_isotig11941
MH08178
Experimental_infoExpr_patternExpr1062591
Microarray_resultsGPL8303_CB6_WBGene00039201_A
GPL14143_CBG20142_1139-1198_0.844_36_A
GPL14143_CBG20142_1261-1320_0.872_21_C
GPL14143_CBG20142_1605-1664_0.736_146_B
MethodGene