WormBase Tree Display for Gene: WBGene00039314

WBGene00039314 SMap: S_parent: Sequence: cb25.fpc4171
  Identity: Version: 2
    Name: CGC_name: Cbr-ttr-56 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20294
      Molecular_name: CBG20294
        CBG20294.1
        CBP43535
      Other_name: CBG_20294 Accession_evidence: NDB HE601190
      Public_name: Cbr-ttr-56
    DB_info: Database: NDB locus_tag CBG_20294
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-ttr-56
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    RNASeq_FPKM: WBls:0000002 0.284363 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.333692 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.716713 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.367054 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.375751 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.467139 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.187481 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.374962 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.124987 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.061598 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.30799 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 0 From_analysis (12)
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.140025 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.280051 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        1.03209 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        3.84831 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 0 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        31.1794 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        7.79485 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        12.4587 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        14.7292 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        24.9174 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        32.2785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 16.0579 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        3.06184 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        5.39557 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        6.99446 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        8.12619 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        9.12116 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        3.37112 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        6.19501 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        7.33367 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.66602 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        3.64886 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00142812
    Ortholog: WBGene00050896 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00083483 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CSP26.g3190 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP40.g306 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-ttr-56 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_01734.g22797 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_001975 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g1081 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00039313 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in cell surface. Is an ortholog of C. elegans ttr-56. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20294
    Corresponding_CDS_history: CBG20294:bp194
      CBG20294:bp255
    Corresponding_transcript: CBG20294.1
  Experimental_info: Expr_pattern: Expr1067047
    Microarray_results: GPL8303_CB6_WBGene00039314_A
      GPL8303_CB6_WBGene00039314_B
      GPL14143_CBG20294_75-134_0.952_3_A
  Method: Gene