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WormBase Tree Display for Gene: WBGene00039354

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Name Class

WBGene00039354SMapS_parentSequencecb25.fpc4180
IdentityVersion2
NameCGC_nameCbr-top-1From_analysisInferred_from_orthology
Sequence_nameCBG20349
Molecular_nameCBG20349a
CBG20349a.1
CBP46347
CBG20349b
CBP44976
CBG20349b.1
Other_nameCBG_20349Accession_evidenceNDBHE601396
Public_nameCbr-top-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-top-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtop
AlleleWBVar00028852
WBVar00028867
WBVar00028857
WBVar00028862
WBVar00028847
RNASeq_FPKMWBls:0000002125.421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
29.1655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
75.266From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
76.6175From_analysisRNASeq.briggsae.WBls:0000002.control_mean
59.0576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
67.1618From_analysisRNASeq.briggsae.WBls:0000002.control_median
72.2275From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003346.17From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
411.757From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
477.344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
287.637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
370.384From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004143.035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
147.919From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
152.803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
149.594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
152.115From_analysisRNASeq.briggsae.WBls:0000004.control_mean
154.598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
160.547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.9508From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
26.1727From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.5376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
57.0296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
34.273From_analysisRNASeq.briggsae.WBls:0000027.control_mean
36.4902From_analysisRNASeq.briggsae.WBls:0000027.control_median
58.5741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003570.5964From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.4986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
51.3568From_analysisRNASeq.briggsae.WBls:0000038.control_mean
53.741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
60.0434From_analysisRNASeq.briggsae.WBls:0000038.control_median
66.3458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
69.842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:0000041130.528From_analysisRNASeq.briggsae.WBls:0000041.control_mean
143.387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
149.23From_analysisRNASeq.briggsae.WBls:0000041.control_median
155.073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
161.962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
61.6901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
108.67From_analysisRNASeq.briggsae.WBls:0000041.control_median
108.767From_analysisRNASeq.briggsae.WBls:0000041.control_mean
56.5376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
73.9521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006355.6445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
55.7586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
55.8403From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
60.0284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
65.307From_analysisRNASeq.briggsae.WBls:0000063.control_mean
99.2631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
57.9343From_analysisRNASeq.briggsae.WBls:0000063.control_median
66.307From_analysisRNASeq.briggsae.WBls:0000063.control_mean
71.3073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010161.6901From_analysisRNASeq.briggsae.total_over_all_stages.control_median
95.3173From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
100.948From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
68.0939From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00142849
00142850
00142851
00142852
Contained_in_operonCBOPA1010
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA topoisomerase type I (single strand cut, ATP-independent) activity. Predicted to be involved in DNA topological change. Predicted to be located in chromosome. Is an ortholog of C. elegans top-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20349a
CBG20349b
Corresponding_CDS_historyCBG20349:bp194
CBG20349:bp255
Corresponding_transcriptCBG20349a.1
CBG20349b.1
Other_sequence (95)
Experimental_infoExpr_patternExpr1068036
Microarray_resultsGPL8303_CB6_WBGene00039354_A
GPL8303_CB6_WBGene00039354_B
GPL8303_CB6_WBGene00039354_C
GPL8303_CB6_WBGene00039354_D
GPL8303_CB6_WBGene00039354_E
GPL14143_CBG20349_1602-1661_0.819_122_C
GPL14143_CBG20349_1992-2051_0.926_15_B
GPL14143_CBG20349_2043-2102_0.943_6_A
MethodGene