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WormBase Tree Display for Gene: WBGene00039661

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Name Class

WBGene00039661SMapS_parentSequencecb25.fpc4206c
IdentityVersion2
NameCGC_nameCbr-rpoa-1From_analysisInferred_from_orthology
Sequence_nameCBG20734
Molecular_nameCBG20734a
CBG20734a.1
CBP11563
CBG20734b
CBP47668
CBG20734b.1
Other_nameCBG_20734Accession_evidenceNDBHE600928
Public_nameCbr-rpoa-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
228 Sep 2012 14:32:03WBPerson2970Name_changeCGC_nameCbr-rpoa-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpoa
RNASeq_FPKMWBls:000000228.0743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
28.2837From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
29.8168From_analysisRNASeq.briggsae.WBls:0000002.control_mean
33.0923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
30.688From_analysisRNASeq.briggsae.WBls:0000002.control_median
30.9102From_analysisRNASeq.briggsae.WBls:0000002.control_mean
34.1905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000328.9697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
34.576From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
40.1823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
27.3508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
32.1676From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000434.2286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
36.2147From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
38.2008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
32.3828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
34.9901From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
35.3959From_analysisRNASeq.briggsae.WBls:0000004.control_mean
37.1774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002718.8981From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
23.8247From_analysisRNASeq.briggsae.WBls:0000027.control_mean
47.0152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.56078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
27.7626From_analysisRNASeq.briggsae.WBls:0000027.control_mean
29.2372From_analysisRNASeq.briggsae.WBls:0000027.control_median
39.5762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003529.46From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003821.6214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
39.7282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
39.8366From_analysisRNASeq.briggsae.WBls:0000038.control_median
39.9449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
40.2762From_analysisRNASeq.briggsae.WBls:0000038.control_mean
59.8102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004125.8888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
37.8848From_analysisRNASeq.briggsae.WBls:0000041.control_mean
38.5147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
40.7473From_analysisRNASeq.briggsae.WBls:0000041.control_median
42.98From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
44.1557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
25.1627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
34.9792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
35.2802From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.7469From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006341.3168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
45.7614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
51.2437From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
53.4554From_analysisRNASeq.briggsae.WBls:0000063.control_mean
54.3273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
74.6279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
33.5386From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
48.5025From_analysisRNASeq.briggsae.WBls:0000063.control_median
50.1359From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010136.1124From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
38.2008From_analysisRNASeq.briggsae.total_over_all_stages.control_median
34.6039From_analysisRNASeq.briggsae.total_over_all_stages.control_median
35.437From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143114
00143115
00143116
Ortholog (40)
ParalogWBGene00027817Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028171Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00043010Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00087775Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in DNA-templated transcription. Is an ortholog of C. elegans rpoa-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20734a
CBG20734b
Corresponding_CDS_historyCBG20734:bp194
CBG20734:bp255
Corresponding_transcriptCBG20734a.1
CBG20734b.1
Other_sequence (84)
Experimental_infoExpr_patternExpr1067426
Microarray_resultsGPL8303_CB6_WBGene00039661_A
GPL8303_CB6_WBGene00039661_B
GPL8303_CB6_WBGene00039661_C
GPL8303_CB6_WBGene00039661_D
GPL8303_CB6_WBGene00039661_E
GPL14143_CBG20734_941-1000_0.802_10_B
GPL14143_CBG20734_2864-2923_0.785_69_C
GPL14143_CBG20734_3256-3315_0.788_61_A
MethodGene