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WormBase Tree Display for Gene: WBGene00039824

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Name Class

WBGene00039824SMapS_parentSequencecb25.fpc4206c
IdentityVersion2
NameCGC_nameCbr-pqn-87From_analysisInferred_from_orthology
Sequence_nameCBG20921
Molecular_name (21)
Other_nameCBG_20921Accession_evidenceNDBHE600928
Public_nameCbr-pqn-87
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-pqn-87
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpqn
RNASeq_FPKMWBls:0000002150.526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
47.8682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
96.6963From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
98.3635From_analysisRNASeq.briggsae.WBls:0000002.control_mean
80.2441From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
88.4702From_analysisRNASeq.briggsae.WBls:0000002.control_median
93.8336From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003173.782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
201.859From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
229.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
180.077From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
194.598From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004180.967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
182.832From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
184.697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
181.071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
186.942From_analysisRNASeq.briggsae.WBls:0000004.control_mean
190.563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
197.413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002718.6834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
51.8776From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
54.3906From_analysisRNASeq.briggsae.WBls:0000027.control_mean
92.6107From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
108.934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
68.0264From_analysisRNASeq.briggsae.WBls:0000027.control_mean
72.2441From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:0000035141.503From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038111.7From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
118.23From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
46.3041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
67.6812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
85.9788From_analysisRNASeq.briggsae.WBls:0000038.control_mean
89.6906From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:0000041128.973From_analysisRNASeq.briggsae.WBls:0000041.control_mean
142.507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
143.544From_analysisRNASeq.briggsae.WBls:0000041.control_median
144.582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
148.21From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
80.5909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
108.252From_analysisRNASeq.briggsae.WBls:0000041.control_mean
111.549From_analysisRNASeq.briggsae.WBls:0000041.control_median
53.3083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
80.3109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063125.937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
82.8From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
83.1034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
85.5219From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
87.2719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
92.9268From_analysisRNASeq.briggsae.WBls:0000063.control_mean
81.5833From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
84.3127From_analysisRNASeq.briggsae.WBls:0000063.control_median
91.0362From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101104.263From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
92.6107From_analysisRNASeq.briggsae.total_over_all_stages.control_median
109.925From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
94.6535From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (28)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. Is an ortholog of C. elegans pqn-87.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20921a
CBG20921b
CBG20921c
CBG20921d
CBG20921e
CBG20921f
CBG20921g
Corresponding_CDS_historyCBG20921:bp194
CBG20921:bp255
Corresponding_transcriptCBG20921a.1
CBG20921b.1
CBG20921c.1
CBG20921d.1
CBG20921e.1
CBG20921f.1
CBG20921g.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1052327
Microarray_resultsGPL8303_CB6_WBGene00039824_A
GPL8303_CB6_WBGene00039824_B
GPL14143_CBG20921_621-680_0.794_27_C
GPL14143_CBG20921_928-987_0.795_24_A
GPL14143_CBG20921_4235-4294_0.797_19_B
MethodGene