WormBase Tree Display for Gene: WBGene00040395

WBGene00040395 SMap: S_parent: Sequence: cb25.fpc4260b
  Identity: Version: 2
    Name: CGC_name: Cbr-pigc-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21692
      Molecular_name: CBG21692
        CBG21692.1
        CBP44269
      Other_name: CBG_21692 Accession_evidence: NDB HE600966
      Public_name: Cbr-pigc-1
    DB_info: Database: NDB locus_tag CBG_21692
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 08 Feb 2019 15:42:26 WBPerson1983 Name_change: CGC_name: Cbr-pigc-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pigc
    RNASeq_FPKM: WBls:0000002 27.0313 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        29.1966 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        30.7797 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        36.1111 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        32.6539 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        32.6976 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        38.4513 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 43.7173 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        51.9736 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        60.2299 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        46.9267 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        50.2913 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 39.3641 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        39.4333 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        39.5024 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        30.71 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        35.3539 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        38.0565 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        45.3521 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 23.7717 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        24.3946 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        25.9225 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        27.9945 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        28.2404 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        28.7986 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        30.5583 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        34.319 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        9.43773 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        15.6603 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        20.5507 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        24.0357 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 10.158 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.55483 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        25.4455 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.47379 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        11.5602 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        12.5302 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        19.6466 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 27.1075 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.5484 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        29.0651 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        33.0649 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        33.3963 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        33.7276 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        38.9197 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 37.454 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        39.1945 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        39.3536 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        39.4224 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        39.6503 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        41.1157 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        40.383 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        41.2267 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        43.6929 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        46.2528 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 20.9807 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        26.9181 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        27.8891 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        28.4595 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        32.6194 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        33.8902 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        21.5523 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        27.3083 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        27.4036 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 29.7897 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        32.6194 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        31.3642 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        33.3963 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00143813
      00143814
    Ortholog: WBGene00011860 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063832 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00145423 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00073835 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00149298 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00122599 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g10899 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12892 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16960 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19283 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7917 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2860 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4666 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6767 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1789 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22183 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00552.g12141 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g13127 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold610.g5837 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00133.g5231 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_24016 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11438 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g4582 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40346510 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00226124 Brugia malayi From_analysis: WormBase-Compara
      WBGene00240515 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00256847 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290209 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Is an ortholog of C. elegans pigc-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21692
    Corresponding_CDS_history: CBG21692:bp194
      CBG21692:bp255
    Corresponding_transcript: CBG21692.1
    Other_sequence: Tcol_isotig05559
      Dviv_isotig13883
      Dviv_isotig13886
      Tcol_isotig05560
      Dviv_isotig13884
      JO468635.1
      Dviv_isotig13885
      JI166926.1
      Tcol_isotig05561
      CBC00226_1
      Tcol_isotig05562
  Experimental_info: Expr_pattern: Expr1052161
    Microarray_results: GPL8303_CB6_WBGene00040395_A
      GPL8303_CB6_WBGene00040395_C
      GPL14143_CBG21692_90-149_0.868_12_C
      GPL14143_CBG21692_336-395_0.466_84_B
      GPL14143_CBG21692_452-511_0.949_1_A
  Method: Gene