WormBase Tree Display for Gene: WBGene00040460

WBGene00040460 SMap: S_parent: Sequence: cb25.fpc4260b
  Identity: Version: 3
    Name: CGC_name: Cbr-icln-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21766
      Molecular_name: CBG21766a
        CBG21766a.1
        CBP27692
        CBG21766b
        CBP24226
        CBG21766b.1
      Other_name: Cbr-icl-1 From_analysis: Inferred_from_orthology
        CBG_21766 Accession_evidence: NDB HE600966
      Public_name: Cbr-icln-1
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:05 WBPerson2970 Name_change: CGC_name: Cbr-icl-1
        3 16 Nov 2010 16:33:39 WBPerson2970 Name_change: CGC_name: Cbr-icln-1
                Other_name: Cbr-icl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: icln
    RNASeq_FPKM: WBls:0000002 52.9695 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        59.3987 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        61.9127 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        63.314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        61.147 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        62.6133 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        66.3919 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 75.0493 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        79.1528 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        83.2564 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        75.8725 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        78.0594 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 57.0501 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        58.3802 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        59.7103 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        61.8561 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        63.4761 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        68.9233 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        69.8406 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 101.801 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        33.7741 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        52.418 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        55.0081 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        66.2983 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        66.5469 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        67.7363 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        69.1742 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        75.7068 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        39.3849 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        76.3438 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        88.2223 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
      WBls:0000027 12.2725 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        20.9046 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.31734 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        47.124 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        27.6379 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        29.6982 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        47.8378 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 38.8476 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 14.7349 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        37.499 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        37.7436 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        38.4702 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        39.1969 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        58.3204 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 32.8338 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        75.3272 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        84.3419 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        86.7508 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        89.1598 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        94.9733 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        36.0656 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        49.375 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        64.4582 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        66.8585 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 109.453 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        54.6512 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        58.5551 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        65.4151 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        72.3838 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        73.8444 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        59.5826 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        62.4989 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        70.2502 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 56.3529 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        58.5551 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        57.1047 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        59.6465 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00143879
      00143880
      00143881
      00143882
      00143883
      00143884
      00143885
    Ortholog: WBGene00002046 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063896 Caenorhabditis remanei From_analysis: OMA
            WormBase-Compara
      WBGene00073657 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057839 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00132332 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00175640 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00271728 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CBOVI.g8151 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13971 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19241 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4044 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26698 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12357 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g16391 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3359 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12748 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00155.g5764 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-icln-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20274 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00790.g15499 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16546 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013341 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01354 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13016 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40352100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00222142 Brugia malayi From_analysis: WormBase-Compara
      chrIV_pilon.g11233 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239011 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263610 Strongyloides ratti From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in cell volume homeostasis; chloride transport; and spliceosomal snRNP assembly. Predicted to be located in cytosol and plasma membrane. Predicted to be part of methylosome and pICln-Sm protein complex. Is an ortholog of C. elegans icln-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21766a
      CBG21766b
    Corresponding_CDS_history: CBG21766:bp194
    Corresponding_transcript: CBG21766a.1
      CBG21766b.1
    Other_sequence: CR01545
      CJC15635_1
      CRC07902_1
      CBC05644_1
  Experimental_info: Expr_pattern: Expr1052028
    Microarray_results: GPL8303_CB6_WBGene00040460_A
      GPL8303_CB6_WBGene00040460_B
      GPL14143_CBG21766_127-186_0.733_46_A
  Method: Gene