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WormBase Tree Display for Gene: WBGene00040740

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Name Class

WBGene00040740SMapS_parentSequencecb25.fpc4321
IdentityVersion5
NameCGC_nameCbr-pqn-59.1From_analysisInferred_from_orthology
Sequence_nameCBG22115
Molecular_nameCBG22115
CBG22115.1
CBP44119
Other_nameCBG_22115Accession_evidenceNDBHE601428
Public_nameCbr-pqn-59.1
DB_infoDatabaseNDBlocus_tagCBG_22115
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-pqn-59.1
324 Jul 2008 11:56:30WBPerson1847EventAcquires_mergeWBGene00040739
431 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270393
531 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270394
628 Jul 2021 11:12:30WBPerson1983Name_changeCGC_nameRemoved
Acquires_mergeWBGene00040739
Split_intoWBGene00270393
WBGene00270394
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpqn
RNASeq_FPKMWBls:0000002114.828From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
128.988From_analysisRNASeq.briggsae.WBls:0000002.control_mean
179.356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
92.7795From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
136.784From_analysisRNASeq.briggsae.WBls:0000002.control_mean
137.5From_analysisRNASeq.briggsae.WBls:0000002.control_median
160.172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003207.739From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
212.309From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
216.878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
193.452From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
206.023From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004124.04From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
128.386From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
132.732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
136.039From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
140.232From_analysisRNASeq.briggsae.WBls:0000004.control_mean
145.945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
162.402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002721.9643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
50.9736From_analysisRNASeq.briggsae.WBls:0000027.control_mean
61.9883From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
68.9681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
53.6493From_analysisRNASeq.briggsae.WBls:0000027.control_mean
61.6763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
61.8323From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:0000035104.221From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038106.642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
55.4048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
84.0441From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
85.1289From_analysisRNASeq.briggsae.WBls:0000038.control_mean
89.2345From_analysisRNASeq.briggsae.WBls:0000038.control_median
94.4248From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:0000041121.02From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
214.307From_analysisRNASeq.briggsae.WBls:0000041.control_mean
236.077From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
241.836From_analysisRNASeq.briggsae.WBls:0000041.control_median
247.595From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
252.534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
114.938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
121.367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
178.722From_analysisRNASeq.briggsae.WBls:0000041.control_median
182.255From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:0000063115.967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
117.46From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
118.12From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
132.373From_analysisRNASeq.briggsae.WBls:0000063.control_mean
140.068From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
170.252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
115.432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
117.79From_analysisRNASeq.briggsae.WBls:0000063.control_median
129.55From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101114.828From_analysisRNASeq.briggsae.total_over_all_stages.control_median
121.579From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
116.714From_analysisRNASeq.briggsae.total_over_all_stages.control_median
124.663From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (15)
ParalogWBGene00040902Caenorhabditis briggsaeFrom_analysisInparanoid_8
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is an ortholog of C. elegans pqn-59.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22115
Corresponding_transcriptCBG22115.1
Other_sequenceCR12544
HBC00050_1
CRC03266_1
CR02820
CBC10845_1
CRC01032_1
CR08625
Experimental_infoExpression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
Remark[210728 pad] The CGC name Cbr-pqn-59.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene