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WormBase Tree Display for Gene: WBGene00041399

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Name Class

WBGene00041399SMapS_parentSequencecb25.fpc4426b
IdentityVersion3
NameCGC_nameCbr-mdt-30From_analysisInferred_from_orthology
Sequence_nameCBG22958
Molecular_nameCBG22958
CBG22958.1
CBP43087
Other_nameCbr-pqn-38From_analysisInferred_from_orthology
CBG_22958Accession_evidenceNDBHE600964
Public_nameCbr-mdt-30
DB_infoDatabaseNDBlocus_tagCBG_22958
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-pqn-38
323 Apr 2010 14:43:28WBPerson2970Name_changeCGC_nameCbr-mdt-30
Other_nameCbr-pqn-38
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmdt
AlleleWBVar00132559
WBVar00140045
WBVar00132560
WBVar00058349
WBVar00132557
WBVar00132558
RNASeq_FPKMWBls:000000212.4179From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.8854From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
17.2534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.1148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.9445From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.705From_analysisRNASeq.briggsae.WBls:0000002.control_median
14.5245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000327.6025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
28.5376From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
29.4728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
27.2017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
28.0923From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000415.4761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
16.1912From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.9063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
11.7895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
15.5527From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.6062From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
17.9856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000271.29066From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.75617From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.66052From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.31734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.35533From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.98893From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.15281From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.2956From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.2453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.8175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.75104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.27262From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.65201From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.79421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004110.7793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.4626From_analysisRNASeq.briggsae.WBls:0000041.control_mean
17.6923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
19.1521From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.6119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
20.7668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
11.9165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
14.8044From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.0035From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.25392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006310.2321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.4458From_analysisRNASeq.briggsae.WBls:0000063.control_mean
10.6694From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
11.0176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
11.5724From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
8.73772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
10.8435From_analysisRNASeq.briggsae.WBls:0000063.control_median
10.9717From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.6007From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.2321From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.3673From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.8984From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.018From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (18)
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans mdt-30.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22958
Corresponding_CDS_historyCBG22958:bp194
CBG22958:bp255
Corresponding_transcriptCBG22958.1
Other_sequenceJI462441.1
GW406596.1
MHC02449_1
MH03533
PSC01964_2
CJC14540_1
CBC06657_1
Experimental_infoExpr_patternExpr1063749
Microarray_resultsGPL8303_CB6_WBGene00041399_A
GPL8303_CB6_WBGene00041399_B
GPL14143_CBG22958_1243-1302_0.773_47_B
GPL14143_CBG22958_1401-1460_0.956_2_C
GPL14143_CBG22958_1528-1587_0.960_1_A
MethodGene