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WormBase Tree Display for Gene: WBGene00041542

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Name Class

WBGene00041542SMapS_parentSequencecb25.fpc4470
IdentityVersion2
NameCGC_nameCbr-lgc-49From_analysisInferred_from_orthology
Sequence_nameCBG23132
Molecular_nameCBG23132
CBG23132.1
CBP24409
Other_nameCBG_23132Accession_evidenceNDBHE601533
Public_nameCbr-lgc-49
DB_infoDatabaseNDBlocus_tagCBG_23132
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:50WBPerson2970Name_changeCGC_nameCbr-lgc-49
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
RNASeq_FPKMWBls:00000020.508221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.937904From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.08287From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.22262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.624494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.853682From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.859551From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.070541From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.081809From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.093076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.054539From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.112486From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.224972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.366418From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.388736From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.575405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.776885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.274265From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.673038From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.74485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.00956From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.19199From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.74883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.71343From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.058982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.553201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.705025From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.856849From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.01866From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.6056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.093843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.101097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.122373From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.143649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.50456From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.67965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.508606From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.644663From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.873563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.976176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.238189From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.249767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.283362From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.310964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.346851From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.243958From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.272804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.278083From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001010.310964From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.804354From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.437319From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.803707From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144733
00144734
00144735
00144736
00144737
00144738
Ortholog (29)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-49.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23132
Corresponding_CDS_historyCBG23132:bp194
CBG23132:bp255
Corresponding_transcriptCBG23132.1
Other_sequence (17)
Experimental_infoExpr_patternExpr1055085
Microarray_resultsGPL8303_CB6_WBGene00041542_A
GPL8303_CB6_WBGene00041542_B
GPL14143_CBG23132_971-1030_0.862_31_B
GPL14143_CBG23132_1167-1226_0.792_84_A
GPL14143_CBG23132_1255-1314_0.825_58_C
MethodGene