WormBase Tree Display for Gene: WBGene00041596

WBGene00041596 SMap: S_parent: Sequence: cb25.fpc4470
  Identity: Version: 2
    Name: CGC_name: Cbr-deg-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG23194
      Molecular_name: CBG23194
        CBG23194.1
        CBP05497
      Other_name: CBG_23194 Accession_evidence: NDB HE601533
      Public_name: Cbr-deg-3
    DB_info: Database: NDB locus_tag CBG_23194
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:11 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-deg-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: deg
    RNASeq_FPKM: WBls:0000002 2.03171 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        3.525 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        3.81806 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        4.72522 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        2.31023 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        3.06415 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        3.2213 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.197313 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.374 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.550688 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.400236 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0.452706 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.679986 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        0.910713 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.14144 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.54607 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.568048 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.745785 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.793383 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.22721 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.96445 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        2.36771 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        5.91148 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.17494 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        2.62214 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.38543 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 3.31012 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.622215 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.56782 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        4.90029 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        5.36754 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        8.16726 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        8.24387 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 0.894438 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.998286 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.32067 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.64305 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.73968 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.42296 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        2.27808 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.34165 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.04025 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        3.66948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.526394 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.526682 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.835491 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.55876 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.56562 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.995219 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.04272 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.79386 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 1.56562 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.43103 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.60433 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.29103 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00144795
      00144796
      00144797
      00144798
      00144799
      00144800
    Ortholog (33)
    Paralog (104)
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans deg-3. In C. elegans, deg-3 is involved in positive regulation of locomotion involved in locomotory behavior and regulation of programmed cell death. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG23194
    Corresponding_CDS_history: CBG23194:bp194
      CBG23194:bp255
    Corresponding_transcript: CBG23194.1
    Other_sequence (23)
  Experimental_info: Microarray_results: GPL14143_CBG23194_971-1030_0.807_78_C
  Method: Gene