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WormBase Tree Display for Gene: WBGene00041620

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Name Class

WBGene00041620SMapS_parentSequencecb25.fpc4470
IdentityVersion2
NameCGC_nameCbr-ttll-5From_analysisInferred_from_orthology
Sequence_nameCBG23229
Molecular_nameCBG23229
CBG23229.1
CBP39905
Other_nameCBG_23229Accession_evidenceNDBHE601533
Public_nameCbr-ttll-5
DB_infoDatabaseNDBlocus_tagCBG_23229
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ttll-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttll
RNASeq_FPKMWBls:000000230.1686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
34.7931From_analysisRNASeq.briggsae.WBls:0000002.control_mean
36.1866From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
38.0241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
37.1054From_analysisRNASeq.briggsae.WBls:0000002.control_median
37.4417From_analysisRNASeq.briggsae.WBls:0000002.control_mean
45.3874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000375.601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
76.4394From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
77.2778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
81.5683From_analysisRNASeq.briggsae.WBls:0000003.control_mean
91.8261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000438.703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
42.7024From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
46.7017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
44.1125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
44.2277From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
44.4816From_analysisRNASeq.briggsae.WBls:0000004.control_mean
48.6631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002713.5234From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.34042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
30.525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.7049From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.727From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.0214From_analysisRNASeq.briggsae.WBls:0000027.control_median
30.3378From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.3362From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003822.7297From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
23.6728From_analysisRNASeq.briggsae.WBls:0000038.control_mean
24.2365From_analysisRNASeq.briggsae.WBls:0000038.control_median
25.7432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
38.2234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.99487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004128.2875From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
59.3981From_analysisRNASeq.briggsae.WBls:0000041.control_mean
69.098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
69.4065From_analysisRNASeq.briggsae.WBls:0000041.control_median
69.715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
70.4919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
40.9454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
43.0393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
53.5962From_analysisRNASeq.briggsae.WBls:0000041.control_mean
56.0686From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.8463From_analysisRNASeq.briggsae.WBls:0000063.control_mean
31.5905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
33.6994From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
34.05From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
34.8918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
28.66From_analysisRNASeq.briggsae.WBls:0000063.control_mean
33.8747From_analysisRNASeq.briggsae.WBls:0000063.control_median
37.7286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010134.05From_analysisRNASeq.briggsae.total_over_all_stages.control_median
34.8927From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
36.4483From_analysisRNASeq.briggsae.total_over_all_stages.control_median
37.8462From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144850
00144851
Ortholog (29)
ParalogWBGene00027977Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031154Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031388Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031971Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039260Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity. Predicted to be involved in protein modification process. Is an ortholog of C. elegans ttll-5. In C. elegans, ttll-5 is involved in response to hermaphrodite contact.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23229
Corresponding_CDS_historyCBG23229:bp255
Corresponding_transcriptCBG23229.1
Other_sequence (49)
Experimental_infoExpr_patternExpr1068506
Microarray_resultsGPL8303_CB6_WBGene00041620_A
GPL8303_CB6_WBGene00041620_B
GPL14143_CBG23229_211-270_0.807_85_B
GPL14143_CBG23229_1731-1790_0.936_3_C
GPL14143_CBG23229_1860-1919_0.962_1_A
MethodGene