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WormBase Tree Display for Gene: WBGene00041997

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Name Class

WBGene00041997SMapS_parentSequencecb25.NA_033
IdentityVersion2
NameCGC_nameCbr-hrpu-1From_analysisInferred_from_orthology
Sequence_nameCBG23721
Molecular_nameCBG23721
CBG23721.1
CBP12570
Other_nameCBG_23721Accession_evidenceNDBHE601101
Public_nameCbr-hrpu-1
DB_infoDatabaseNDBlocus_tagCBG_23721
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
216 Feb 2017 15:39:40WBPerson2970Name_changeCGC_nameCbr-hrpu-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhrpu
AlleleWBVar00133303
WBVar00009014
WBVar00133304
WBVar00133305
WBVar00133306
WBVar00133301
WBVar00133302
RNASeq_FPKMWBls:000000218.2818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.90321From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
7.59137From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
9.59213From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.2583From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.9366From_analysisRNASeq.briggsae.WBls:0000002.control_median
20.2566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000331.1903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
49.9109From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
68.6314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
34.3501From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
44.7239From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000449.2259From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
49.2843From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
49.3427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
44.7185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
49.008From_analysisRNASeq.briggsae.WBls:0000004.control_mean
49.7306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
52.0221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002712.5914From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.6991From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.3431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.73187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.2487From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.96From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.2208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.2191From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.8828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
11.9156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
15.3055From_analysisRNASeq.briggsae.WBls:0000038.control_median
15.5708From_analysisRNASeq.briggsae.WBls:0000038.control_mean
18.6953From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.7893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004110.554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.6351From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.2167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
19.4736From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.7306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
21.0392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
10.8291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
14.5229From_analysisRNASeq.briggsae.WBls:0000041.control_median
14.9537From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.35279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006323.6261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
23.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
24.4316From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.5622From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
24.6873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.3473From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.6462From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.2486From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.71927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010118.2167From_analysisRNASeq.briggsae.total_over_all_stages.control_median
19.6228From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.2493From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.3753From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (24)
ParalogWBGene00025013Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: SAP domain; B30.2/SPRY domain superfamily; SPRY domain; Concanavalin A-like lectin/glucanase domain superfamily; P-loop containing nucleoside triphosphate hydrolase; and AAA domain. Is an ortholog of C. elegans hrpu-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23721
Corresponding_CDS_historyCBG23721:bp194
CBG23721:bp255
Corresponding_transcriptCBG23721.1
Other_sequence (12)
Experimental_infoExpr_patternExpr1054283
Microarray_resultsGPL8303_CB6_WBGene00034530_A
GPL8303_CB6_WBGene00034530_B
GPL8303_CB6_WBGene00041997_A
GPL8303_CB6_WBGene00041997_B
GPL14143_CBG23721_3349-3408_0.732_243_B
GPL14143_CBG23721_3892-3951_0.844_35_A
GPL14143_CBG23721_4029-4088_0.881_11_C
MethodGene