WormBase Tree Display for Gene: WBGene00044070
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| WBGene00044070 | SMap | S_parent | Sequence | T22A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | set-18 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | T22A3.4 | ||||||||
| Molecular_name | T22A3.4a | ||||||||
| T22A3.4a.1 | |||||||||
| CE13918 | |||||||||
| T22A3.4b | |||||||||
| CE32497 | |||||||||
| T22A3.4b.1 | |||||||||
| Other_name | tag-237 | ||||||||
| CELE_T22A3.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | set-18 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 22 Dec 2004 16:59:41 | WBPerson2970 | Event | Created | |||
| 2 | 05 Oct 2005 16:52:05 | WBPerson2970 | Event | Acquires_merge | WBGene00011907 | ||||
| Name_change | CGC_name | set-18 | |||||||
| Other_name | tag-237 | ||||||||
| 3 | 03 May 2007 14:40:48 | WBPerson2970 | Name_change | CGC_name | set-18 | ||||
| Other_name | tag-237 | ||||||||
| Acquires_merge | WBGene00011907 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00036050 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00083764 | ||||||||
| 00083765 | |||||||||
| 00083766 | |||||||||
| 00083767 | |||||||||
| 00083768 | |||||||||
| 00083769 | |||||||||
| 00083770 | |||||||||
| 00083771 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00009370 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00022499 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00007403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011068 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | set-18 encodes, by alternative splicing, two isoforms of a divergent ortholog of human SMYD1 (OMIM:606846), SMYD2 (OMIM:610663), and SYMD3 (OMIM:608783); SET-18 is paralogous to SET-10, SET-14, and SET-30. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 27 Jul 2012 00:00:00 | ||||||||
| Automated_description | Enables histone H3K36 methyltransferase activity. Predicted to be involved in chromatin remodeling. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Expressed in body wall musculature; non-striated muscle; pharynx; and vulva. Is an ortholog of human SMYD1 (SET and MYND domain containing 1) and SMYD3 (SET and MYND domain containing 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T22A3.4a | |||||||
| T22A3.4b | |||||||||
| Corresponding_CDS_history | T22A3.4:wp90 | ||||||||
| Corresponding_transcript | T22A3.4a.1 | ||||||||
| T22A3.4b.1 | |||||||||
| Other_sequence | Dviv_isotig32042 | ||||||||
| CJC06971_1 | |||||||||
| BXC02497_1 | |||||||||
| CR00424 | |||||||||
| JI472783.1 | |||||||||
| CRC02025_1 | |||||||||
| Associated_feature | WBsf643700 | ||||||||
| WBsf656885 | |||||||||
| WBsf218462 | |||||||||
| WBsf218463 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00109647 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00109694 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113452 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109788 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109741 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091478 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004254 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117133 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053773 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035779 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4919 | ||||||||
| Expr9435 | |||||||||
| Expr13553 | |||||||||
| Expr14376 | |||||||||
| Expr1028873 | |||||||||
| Expr1040177 | |||||||||
| Expr1157324 | |||||||||
| Expr2015762 | |||||||||
| Expr2033995 | |||||||||
| Drives_construct | WBCnstr00012332 | ||||||||
| WBCnstr00023780 | |||||||||
| WBCnstr00039714 | |||||||||
| Construct_product | WBCnstr00014000 | ||||||||
| WBCnstr00023780 | |||||||||
| WBCnstr00039714 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (211) | |||||||||
| SAGE_tag (19) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | I | Position | 5.05721 | Error | 0.000501 | |||
| Positive | Positive_clone | T22A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5545 | |||||||
| 5267 | |||||||||
| 5599 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00031003 | |||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00053790 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
