WormBase Tree Display for Gene: WBGene00051640

WBGene00051640 SMap: S_parent: Sequence: Crem_Contig0
  Identity: Version: 3
    Name: CGC_name: Cre-egl-13 From_analysis: Inferred_from_orthology
      Sequence_name: CRE00702
      Molecular_name: CRE00702
        CRE00702.1
        RP31323
      Other_name: cr01.sctg0.wum.631
      Public_name: Cre-egl-13
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:25 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:49 WBPerson2970 Name_change: CGC_name: Cre-egl-13
        3 03 Jul 2008 11:44:26 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE00702
                Other_name: cr01.sctg0.wum.631
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: egl
    RNASeq_FPKM: WBls:0000004 1.88312 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        2.0676 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        2.25207 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 10.1311 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        10.2375 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        11.359 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        12.5869 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        15.5061 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        2.72574 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 10.5643 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        12.5138 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        15.459 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        3.72004 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 1.30277 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        1.40695 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        1.65418 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        1.74206 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        1.7574 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        1.82993 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        2.0819 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        2.26868 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 2.32494 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        4.44369 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (31)
    Paralog: WBGene00051328 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00051977 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00056246 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00056247 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00058524 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00058538 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00061572 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00078202 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00079182 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: HMG (high mobility group) box; High mobility group box domain superfamily; and High mobility group box domain. Is an ortholog of C. elegans egl-13. In C. elegans, egl-13 is involved in several processes, including cell fate commitment; regulation of DNA-templated transcription; and vulval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE00702
    Corresponding_transcript: CRE00702.1
    Other_sequence: EY458631.1
      GRC00471_1
      JI167660.1
      MH03081
      TSC12919_1
      ES565237.1
      MHC00172_1
      Acan_isotig10684
      Dviv_isotig23448
      GR14299
  Experimental_info: Expr_pattern: Expr1098040
    Microarray_results: GPL14146_CRE00702_1183-1242_0.935_6_C
      GPL14146_CRE00702_1216-1275_0.919_11_B
      GPL14146_CRE00702_1429-1488_0.978_1_A
  Method: Gene