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WormBase Tree Display for Gene: WBGene00052679

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Name Class

WBGene00052679SMapS_parentSequenceCrem_Contig5
IdentityVersion3
NameCGC_nameCre-ncx-9From_analysisInferred_from_orthology
Sequence_nameCRE27496
Molecular_nameCRE27496
CRE27496.1
RP47942
Other_namecr01.sctg1.wum.551
Public_nameCre-ncx-9
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:25WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-ncx-9
303 Jul 2008 11:44:37WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE27496
Other_namecr01.sctg1.wum.551
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classncx
RNASeq_FPKMWBls:00000040.044281From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
0.128363From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
0.212445From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (51)
WBls:00000270.37743From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
0.879848From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
2.70953From_analysisRNASeq.remanei.WBls:0000027.control_median
2.76174From_analysisRNASeq.remanei.WBls:0000027.control_mean
4.53921From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
5.25048From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:00000380.218387From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
1.62781From_analysisRNASeq.remanei.WBls:0000038.control_mean
2.24637From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
2.41867From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:00000410.522101From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
0.672068From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
1.01418From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
1.18029From_analysisRNASeq.remanei.WBls:0000041.control_median
1.26031From_analysisRNASeq.remanei.WBls:0000041.control_mean
1.3464From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
1.5355From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
2.47161From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:0000063 (11)
WBls:00001010.985089From_analysisRNASeq.remanei.total_over_all_stages.control_median
1.3359From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00147949
00147950
00147951
00147952
Ortholog (35)
ParalogWBGene00052675Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00055043Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00055042Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00057239Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
WBGene00065061Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans ncx-9. In C. elegans, ncx-9 is involved in calcium export from the mitochondrion and regulation of dorsal/ventral axon guidance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE27496
Corresponding_transcriptCRE27496.1
Other_sequenceCR11256
MHC00807_1
MH01475
ACC09811_1
CR11255
MH08156
MHC12301_1
CRC07216_1
Experimental_infoExpr_patternExpr1094634
Microarray_resultsGPL14146_CRE27496_2026-2085_0.866_52_A
MethodGene