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WormBase Tree Display for Gene: WBGene00052811

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Name Class

WBGene00052811SMapS_parentSequenceCrem_Contig5
IdentityVersion5
NameCGC_nameCre-avr-15From_analysisInferred_from_orthology
Sequence_nameCRE27565
Molecular_nameCRE27565
CRE27565.1
RP00546
Other_namecr01.sctg1.wum.678
Public_nameCre-avr-15
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:25WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-avr-15
303 Jul 2008 11:44:38WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE27565
Other_namecr01.sctg1.wum.678
420 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
528 Jul 2021 11:12:29WBPerson1983Name_changeCGC_nameCre-avr-15
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classavr
RNASeq_FPKMWBls:00000040.132319From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
0.145582From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
0.158845From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:00000270.401803From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
3.93765From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
4.47877From_analysisRNASeq.remanei.WBls:0000027.control_mean
5.08796From_analysisRNASeq.remanei.WBls:0000027.control_median
6.23827From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
7.33737From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:00000381.95291From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
2.8714From_analysisRNASeq.remanei.WBls:0000038.control_mean
3.21101From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
3.45027From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:00000412.41629From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
2.97952From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
3.55151From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
4.40187From_analysisRNASeq.remanei.WBls:0000041.control_median
4.57401From_analysisRNASeq.remanei.WBls:0000041.control_mean
5.25222From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
6.40209From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
6.84243From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:0000063 (12)
WBls:00001013.91887From_analysisRNASeq.remanei.total_over_all_stages.control_median
4.10809From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00148046
00148047
00148048
00148049
00148050
00148051
Ortholog (28)
Paralog (122)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans avr-15. In C. elegans, avr-15 is involved in action potential; locomotion involved in locomotory behavior; and regulation of pharyngeal pumping.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE27565
Corresponding_transcriptCRE27565.1
Other_sequence (43)
Experimental_infoExpr_patternExpr1117875
Microarray_resultsGPL14146_CRE27565_1216-1275_0.847_60_C
GPL14146_CRE27565_1514-1573_0.923_11_A
GPL14146_CRE27565_1603-1662_0.923_13_B
Remark[180319 gw3] The CGC name Cre-avr-15 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
MethodGene